Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5295 ATGGTATTCACGGGATTGATTGATAATGGCTTTGCTGCGAGTCGTCTTGTGGCGTTCTGCGCTTTATCTGAGTCGCAGGACCTTGATTATTGCACTAAGATATTGTATCGAATCAAAGAACATAATGCATTTTCTTGGAATGCGACGATTAGGGGTTATGTGGAGAGTGGGGACGTTGAAGGAGGTTTTATGTTGTATAGAAGAATGTTGCAAGGTGGTATGTTGAAGCCGGATAATCATACTTACCCGTTATTGCTTAAAGCTTGTTGTTGTCAGTCTTTAAATCATGTCGGTCTTGGTATACTTGGGCACGTGTTGAAGTTTGGGTTTGAATGTGATATATTTATTCACAATGCGTCGATCACTATGTTACTCTCGTCTGGAGAGTTGAGTGTGGCGTATGATGTGTTTAATAAAAGTCATGTGAGAGACTTGGTAACTTGGAATTCCATGATTACTGGATGTGTTAAAAGGGGATTGGTAAATGAGGCTATAGAAATCTATCGGGAAATGAAGGCAAGGAGAGTGAAACCAAACGAGATTACAATGATTGGGATGATTTCTTCTTGTTCTCAGTTGCAGGATTTGAATCTTGGCAGAGAGTTTCATTGTTACATTGAAGAACACGATCTCGAGTTGACAATTCCACTCACTAATGCACTTATGGACATGTATGTGAAGTGCGGGGAATTGTTGGCTGCGCGAGCTCTATTTGATAACATGCCACAAAAGACTCTTGTTTCATGGACTACAATGGTTTTGGGATATTCCAGATTCGGTTTTCTAGATGTTGCTCGGGAGATTTTATATAAAATTCCAGAAAAGAGTGTTGTGCCGTGGAATGCCATCATCAGTGGATGTGTCCAAGCCAAGCATAGTAAAGAGGCACTGGCTTTATTCCATGAAATGCAAATTAGTATGGTAGAACCCGATAAAGTGACCATGGTTAACTGCCTGTCTGCATGCTCACAACTGGGAGCACTTGATGTTGGAATATGGATTCACCGTTATATTGAAAGACATAATCTTTCTCTAGACGTTGCCTTAGGAACTGCACTAGTTGACATGTATGCCAAGTGCGGAAATATTGCAAGGGCACTCCAGGTGTTCGAAGAGATTCCTCAAAGAAATTGTTTGACCTGGACAGCCATCATTTGTGGTTTAGCACTTCATGGGAATGCTCTGATTGCTATATCCTATTTCTCGAAAATGATTAATATTGGAATAATGCCTGACGAGATCACCTTTCTTGGTGTGTTATCAGCTTGTTGCCATGGAGGTTTAGTTGAAGAAGGCCGCAAATACTTTTTTGAAATGAGCTCCAAATTCAACGTATCCCCTAAGCTTAAACACTACTCATGCATGGTGGACCTTTTAGGAAGGGCTGGTCATTTGGAGGAAGCAGAAAAACTCGTTCAAAATATGCCAATGCCAGCAGATGCTGCTGTGTTGGGTGCTCTATTCTTTGCTTGCCGTGTTCATGGAAACGTTCAAATTGGGGAGAGGACGGCCCTTAAGCTTCTTGAGATTGATCCTCATGATAGTGGAAACTATGTTCTGCTCTCTAGCATGTACAGTGAGGCAAAAATGTGGAAGGAGGCAAGGAGCACAAGGGTAATAATGAAGGAGAGAGGAGTAGAGAAGATTCCGGGTTGCAGCTCAGTTGAGATCAATGGCATTGTGCATGAGTTTGTGGTGAGGGATACATCACATCCACAGTCTGAATGGATTTATGAATGTCTGGTTTCGCTGACAAAACAACTGGAGCTTCTCGAATTTACATGA 1785 0.4179 MVFTGLIDNGFAASRLVAFCALSESQDLDYCTKILYRIKEHNAFSWNATIRGYVESGDVEGGFMLYRRMLQGGMLKPDNHTYPLLLKACCCQSLNHVGLGILGHVLKFGFECDIFIHNASITMLLSSGELSVAYDVFNKSHVRDLVTWNSMITGCVKRGLVNEAIEIYREMKARRVKPNEITMIGMISSCSQLQDLNLGREFHCYIEEHDLELTIPLTNALMDMYVKCGELLAARALFDNMPQKTLVSWTTMVLGYSRFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKHSKEALALFHEMQISMVEPDKVTMVNCLSACSQLGALDVGIWIHRYIERHNLSLDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAIICGLALHGNALIAISYFSKMINIGIMPDEITFLGVLSACCHGGLVEEGRKYFFEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEKLVQNMPMPADAAVLGALFFACRVHGNVQIGERTALKLLEIDPHDSGNYVLLSSMYSEAKMWKEARSTRVIMKERGVEKIPGCSSVEINGIVHEFVVRDTSHPQSEWIYECLVSLTKQLELLEFT* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5295 594 TIGRFAM PPR: pentatricopeptide repeat domain 44 74 IPR002885 -
Psa7g5295 594 TIGRFAM PPR: pentatricopeptide repeat domain 415 447 IPR002885 -
Psa7g5295 594 TIGRFAM PPR: pentatricopeptide repeat domain 452 475 IPR002885 -
Psa7g5295 594 TIGRFAM PPR: pentatricopeptide repeat domain 146 180 IPR002885 -
Psa7g5295 594 TIGRFAM PPR: pentatricopeptide repeat domain 280 311 IPR002885 -
Psa7g5295 594 Pfam E+ motif 561 587 IPR046849 -
Psa7g5295 594 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 590 - -
Psa7g5295 594 Gene3D Tetratricopeptide repeat domain 395 563 IPR011990 GO:0005515
Psa7g5295 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Psa7g5295 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
Psa7g5295 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 42 76 IPR002885 -
Psa7g5295 594 Coils Coil 581 594 - -
Psa7g5295 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Psa7g5295 594 Pfam PPR repeat 380 409 IPR002885 -
Psa7g5295 594 Pfam PPR repeat 415 441 IPR002885 -
Psa7g5295 594 Pfam PPR repeat 451 475 IPR002885 -
Psa7g5295 594 Pfam PPR repeat 219 244 IPR002885 -
Psa7g5295 594 Pfam PPR repeat 351 378 IPR002885 -
Psa7g5295 594 Pfam PPR repeat family 42 90 IPR002885 -
Psa7g5295 594 Pfam PPR repeat family 275 322 IPR002885 -
Psa7g5295 594 Pfam PPR repeat family 144 190 IPR002885 -
Psa7g5295 594 PANTHER OS10G0400250 PROTEIN 1 590 - -
Psa7g5295 594 Gene3D Tetratricopeptide repeat domain 197 332 IPR011990 GO:0005515
Psa7g5295 594 Gene3D Tetratricopeptide repeat domain 16 97 IPR011990 GO:0005515
Psa7g5295 594 Gene3D Tetratricopeptide repeat domain 98 196 IPR011990 GO:0005515
Psa7g5295 594 Pfam E motif 494 556 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5295 Psa-Chr7 460871958 460873742 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa7g5295 33 589 Glycoside Hydrolase AT3G49170 29.735 2.87e-83 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5295 - - mtr:MTR_4g024860 1061.21