Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g02811 ATGCGCGGCTACTCTGCCCTTATATCAGAAACAAGCCGGAGTCGCACCGAACTCAACTCGCCGGAAATCGCAGCGGAGATCCTTCGCCGGCCGACACAAACAGCGAGAAACTCCTCCACAAGCTTTGTTAGGAAAAACCCTTTTCTTTCTCTCCTAGAACGATGCAATTCCCTTGTCCAGTTGAAACAAATCCAGGCTCAAATGGTCATGACGGGTTTGATTGATAACAGCTTTGCTGCAAGTCGCCTTGTTGCGTTCTGCGCTCTATCGCAGTCGCGAGCCCTTGATTATTGTACTAAAATATTGTTTGGAATCCGAGAACCGAATGTGTTTTCTTGGAATGCGACGATTAGGGGGTATGTGGAGAGTGGTGACTTGGAAGGAGCTTTTAGGTTGTATAAGAGAATGTTGCAATGTGGTGTGTTGAAGCCGGATAATCATACTTACCCGATGTTGCTTAAAGCTTGTTCTTGTCAATCTTTGAATTGTGTTGGTTTTGGTATACTTGGGCATGTGTTGAAGTTTGGGTTTGAATTTGATATATTTGTGCATAATGCATCGATCACTATGCTACTCTCGTATGGAGAATTGAGGGCAGCATATGACATGTTTGATAAAAGTCGTGTGAGAGATTTGGTAACCTGGAACTCCATGGTTACTGGGTGTGTTAGAAGAGGACTGGCAAATGAGGCTATAAAAATCTATAATGAAATGGTGGCAGAGAAAGTGAAACCGAATGAGATTACGATGATTGGCATGATTTCTTCTTGTTCTCAGTTGCAGGATTTGAATCGCGGCAGAGAATTTCATCGTTACATTGAAGAACACGGTCTTGAGTTGACGGTTCCACTCACTAATGCTCTTATGGACATGTACGTGAAGTGTGGGGAGCTGTTGGCTGCGCGGGTTCTATTTGATAACTTGGCACAGAAGACCCTTTTTTCATGGACTACAATGGTTTTGGGATATGCTAGATTTGGTTTTCTGGACGTTGCACGGGCCATTTTATATAAAATTCCCGAAAAGAGTGTTGTGCCGTGGAATGCCATCATCGGTGGCTGTGTCCAAGCCAAGCACAGTAAAGAGGCATTGGCTCTATTCCATGAAATGCAAATGAGTAAGGTAGAACCTGATAAAGTGACTATGGTTAACTGCTTGTCAGCCTGCTCACAACTAGGAGCACTTGATGTTGGAATATGGATTCACCGTTATATTGGAATACACAATATTTCTCTAGACGTTGCCTTAGGAACTGCACTAGTCGACATGTACGCCAAGTGTGGAAATATTTCAAAGGCACTCCAGGTTTTTGAAGAGATTCCTCAAAGAAATTGTTTGACCTGGACGGCCATCATTTGTGGTTTAGCGCTTCATGGGAATGCTCATGATGCTATATCCTATTTCTCAAAAATGATTCATATTGGAATAATACCTGATGATATCACCTTTCTTGGTGTGTTATCAGCTTGTTGTCATGGAGGTTTAGTTGAAGAAGGCCGCAAACACTTTTCCCAAATGAGCTCTAAATTCAATATATCTCCTAAGCTTAAACACTACTCATGCATGGTGGACCTTTTAGGAAGGGCTGGTAATTTGGAGGAAGCAGAAGAACTCATTAAAAATATGCCCATGGCGGCAGATGCTGCTGTTTTGGGTGCGTTATTCTTTGCTTGCCGTGTTCATGGAAATGTTCCAATTGGAGAGAGGACGGCTTTTAAGCTTCTTGAGATTGATCCTCATGATAGTGGAAACTATGTTTTGCTCTCTAGCATGTATGCTGAGGCAAAAATGTGGAAGGAGGCAAGAAGCGCAAGGAAAATAATGAAGGAGAGAGGAGTAGAGAAGAGTCCTGGTTGCAGCTCAGTTGAGATCAATGGCATTGTCCACGAGTTCGTGGTGAGGGATGCATCACACCCACAGTCTGAATGGATTTATGAATGTCTGGTTTCTCTGACAAAACAACTGGAGCTTCTCGAATTTACATGA 1986 0.431 MRGYSALISETSRSRTELNSPEIAAEILRRPTQTARNSSTSFVRKNPFLSLLERCNSLVQLKQIQAQMVMTGLIDNSFAASRLVAFCALSQSRALDYCTKILFGIREPNVFSWNATIRGYVESGDLEGAFRLYKRMLQCGVLKPDNHTYPMLLKACSCQSLNCVGFGILGHVLKFGFEFDIFVHNASITMLLSYGELRAAYDMFDKSRVRDLVTWNSMVTGCVRRGLANEAIKIYNEMVAEKVKPNEITMIGMISSCSQLQDLNRGREFHRYIEEHGLELTVPLTNALMDMYVKCGELLAARVLFDNLAQKTLFSWTTMVLGYARFGFLDVARAILYKIPEKSVVPWNAIIGGCVQAKHSKEALALFHEMQMSKVEPDKVTMVNCLSACSQLGALDVGIWIHRYIGIHNISLDVALGTALVDMYAKCGNISKALQVFEEIPQRNCLTWTAIICGLALHGNAHDAISYFSKMIHIGIIPDDITFLGVLSACCHGGLVEEGRKHFSQMSSKFNISPKLKHYSCMVDLLGRAGNLEEAEELIKNMPMAADAAVLGALFFACRVHGNVPIGERTAFKLLEIDPHDSGNYVLLSSMYAEAKMWKEARSARKIMKERGVEKSPGCSSVEINGIVHEFVVRDASHPQSEWIYECLVSLTKQLELLEFT 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g02811 661 TIGRFAM PPR: pentatricopeptide repeat domain 418 445 IPR002885 -
Car06g02811 661 TIGRFAM PPR: pentatricopeptide repeat domain 447 479 IPR002885 -
Car06g02811 661 TIGRFAM PPR: pentatricopeptide repeat domain 213 247 IPR002885 -
Car06g02811 661 TIGRFAM PPR: pentatricopeptide repeat domain 347 378 IPR002885 -
Car06g02811 661 TIGRFAM PPR: pentatricopeptide repeat domain 111 142 IPR002885 -
Car06g02811 661 TIGRFAM PPR: pentatricopeptide repeat domain 519 542 IPR002885 -
Car06g02811 661 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Car06g02811 661 Pfam E+ motif 628 654 IPR046849 -
Car06g02811 661 Gene3D Tetratricopeptide repeat domain 467 650 IPR011990 GO:0005515
Car06g02811 661 PANTHER OS10G0400250 PROTEIN 34 657 - -
Car06g02811 661 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
Car06g02811 661 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 109 143 IPR002885 -
Car06g02811 661 Gene3D Tetratricopeptide repeat domain 405 466 IPR011990 GO:0005515
Car06g02811 661 Gene3D Tetratricopeptide repeat domain 265 404 IPR011990 GO:0005515
Car06g02811 661 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Car06g02811 661 Pfam PPR repeat 518 542 IPR002885 -
Car06g02811 661 Pfam PPR repeat 286 307 IPR002885 -
Car06g02811 661 Pfam PPR repeat 447 476 IPR002885 -
Car06g02811 661 Pfam PPR repeat 418 445 IPR002885 -
Car06g02811 661 Pfam PPR repeat 482 508 IPR002885 -
Car06g02811 661 Pfam PPR repeat family 211 257 IPR002885 -
Car06g02811 661 Pfam PPR repeat family 342 389 IPR002885 -
Car06g02811 661 Pfam PPR repeat family 108 156 IPR002885 -
Car06g02811 661 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 34 657 - -
Car06g02811 661 Pfam E motif 561 623 IPR046848 -
Car06g02811 661 Gene3D Tetratricopeptide repeat domain 13 162 IPR011990 GO:0005515
Car06g02811 661 Gene3D Tetratricopeptide repeat domain 168 264 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g02811 Car-Chr6 40910511 40912867 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g02811 100 656 Glycoside Hydrolase AT3G49170 30.714 6.46e-86 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g02811 - - mtr:MTR_4g024860 1079.7