Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11071 ATGCCACTTTCTCTCTTTACAATGGCGGCTCCATCAACACTTTCCCGCCTAAACTTCCTCCCCAAACCTTCACTTCTCTCCACACTCACCGCTTTCCGCAGAAACCAATTTCTACCCAAACGGCCATTTGCCACATCTTCCGGTAACATCTCCTGCGTCGCGACGGAGCTCCACAACCCAACCCCGAAACGCGACGGCGACTTAGTCGTTTTGGGCATCGAAACCAGCTGCGACGACACCGCAGCCGCTGTCGTGAGAAGCAACGGTGAAATTCTGAGTCAAGTGGTGTCTTCTCAGGCAGATCTGCTTGTGAAATATGGAGGCGTTGCTCCAAAAATGGCAGAAGAAGCTCACTCGCAAGTGATAGACCAGGTTGTGCAAGAAGCCCTTGATAAAGCTTCTATGACTGAGAAGGATCTCACTGCTGTTGCTGTTACTATTGGTCCTGGTTTAAGTCTCTGCCTTCGTGTGGGTGTGCAGAAAGCTCGGAGAATTGCTGGGGCCTTTAATTTACCAATTATTGGCATACATCACATGGAGGCTCATGCTCTAGTGGCAAGGTTAATTGAGAAAGATTTGCAGTTTCCATTCATGGCCCTACTTATTTCAGGGGGACACAATTTACTAATTCTTGCTCGTGATCTTGGGCAATACATACAACTTGGAACTACAATAGATGATGCTATTGGTGAGGCATATGACAAGACAGCAAGGTGGCTTGGACTTGATATGAGGAGAAGTGGTGGTCCTGCTGTAGAGGAGCTTGCTAGGGAGGGTAATGCTGAATCAGTCAAATTTTCTATTCCAATGAAGCAGCACAAAGATTGCAACTTCTCCTACGCTGGTCTAAAAACCCAAGTAAGGCTGGCAATTGAGTCCAAAAAGATTGATGCCAAAATTCCTATTTCTTCTGCGAGTCATGAAGACCGATTGTCACGGGCCGATATTGCTGCTTCTTTTCAGCGAATTGCAGTGTTACATCTTGAGGAAAGGTGTGAACGAGCAATACAGTGGGCATTGAAGATGGAGCCTTCTATAAGATACTTGGTTGTCTCTGGTGGTGTTGCGTCAAATCAATATGTTCGGGCTCGGCTTGATATGGTTGTGGAGAAGAATGGCCTGCAACTTGTATGCCCTCCTCCCCGGCTTTGTACCGACAATGGTGTAATGGTTGCTTGGACTGGTATTGAACACTTTCTCATGGGAAGATATGACCCCCCTCCTCCTGCAGAAGAACCAGAAGACTTTGTGGTGTGTTTTCTAAACATTGACAAATACATGGATTGA 1287 0.4685 MPLSLFTMAAPSTLSRLNFLPKPSLLSTLTAFRRNQFLPKRPFATSSGNISCVATELHNPTPKRDGDLVVLGIETSCDDTAAAVVRSNGEILSQVVSSQADLLVKYGGVAPKMAEEAHSQVIDQVVQEALDKASMTEKDLTAVAVTIGPGLSLCLRVGVQKARRIAGAFNLPIIGIHHMEAHALVARLIEKDLQFPFMALLISGGHNLLILARDLGQYIQLGTTIDDAIGEAYDKTARWLGLDMRRSGGPAVEELAREGNAESVKFSIPMKQHKDCNFSYAGLKTQVRLAIESKKIDAKIPISSASHEDRLSRADIAASFQRIAVLHLEERCERAIQWALKMEPSIRYLVVSGGVASNQYVRARLDMVVEKNGLQLVCPPPRLCTDNGVMVAWTGIEHFLMGRYDPPPPAEEPEDFVVCFLNIDKYMD. 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11071 428 NCBIfam tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD 71 392 IPR017861 -
Seca4g11071 428 Hamap tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 68 421 IPR022450 GO:0002949
Seca4g11071 428 SUPERFAMILY Actin-like ATPase domain 70 393 IPR043129 -
Seca4g11071 428 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE 67 402 IPR000905 -
Seca4g11071 428 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 164 183 IPR017861 -
Seca4g11071 428 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 221 242 IPR017861 -
Seca4g11071 428 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 71 84 IPR017861 -
Seca4g11071 428 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 198 210 IPR017861 -
Seca4g11071 428 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 349 358 IPR017861 -
Seca4g11071 428 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 143 163 IPR017861 -
Seca4g11071 428 NCBIfam tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD 70 399 IPR022450 GO:0002949
Seca4g11071 428 Pfam tRNA N6-adenosine threonylcarbamoyltransferase 90 393 IPR000905 -
Seca4g11071 428 Gene3D - 196 379 - -
Seca4g11071 428 FunFam Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial 201 379 - -
Seca4g11071 428 FunFam Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial 70 200 - -
Seca4g11071 428 Gene3D - 70 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11071 Seca-Chr4 249022256 249030646 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11071 K01409 - gmx:100784367 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11071 4 249022256 249030646 Seca4g11071 4 249022256 249030646 ECH