Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev02g2016 ATGATCTTAACAGGCTTAATAGACAATAGCTTTGCTGCAAGTCGCCTTGTTGCCTTTTGTGCTCTATCGGAAGCACAAACTCTTGAATATTGCACAAAGATTTTGTACCATACGCAAGAACCAAATACTTTTTCTTGGAATGTGACAATTAGGGGATACATAGAAAGCGGGGACATGGAAGGAGCTCTTCTGTTGTACAAGAAAATGTTGCGGTGTGGTGGGTTGAAGCCGGATAATCATACTTACCCTTTATTGCTTAAGGCATGTTCTTGTCCATCTCTAAGTTGTGTGGGTCATACTATACTTGGACATGTGTTGAAGTTTGGTTTTGAATTTGATATATTTGTGCACAATGCGTCCATCACTATGTTGCTATCATATGGAGAGTTAGAGGCAGCATATGATGTCTTCAATAAAGCTTGTGTGAGAGACCTGGTAACCTGGAATTCCATGATTAATGGGTGTGTCAAAAGAGGGCTAGCAAATGAGGCTATAGAATTCTATCGGAGAATGGAGGCAGAGAAGGTGGAACCAAATGAGATCACAATGATTGGGATGGTTTCTTCTTGTTCTCAGTTGCAGGATTTGAATCTTGGTCGAGAATTTCATTATTACATCAAAGAACATGGGCTCGAGTTGACAATTCCACTTATCAATGCACTTATGGACATGTACGTTAAGTGTGGAGATCTCTTTGCCGCACAAGTTCTATTTGATAGCATGACACAGAAGACCCTTGTTTCATGGACTACAATGGTTTTGGGATATGCCAGATTTGGTTATCTGGATGTTGCTCGGCAGCTTTTATATGAAGTTCCAGAGAAAAGTGTTGTGCCTTGGAATGCAATCATCAGTGGCTGTGTCCAAGCCAAGCATAGTAAGGAGGCATTAGCTTTGTTCCATGAAATGCAAATTAATACTATAGAACCTGATAAAGTGACCATGATCAACTGCCTGTCTGCATGTTCACAGCTTGGAGCACTCGATATAGGAATATGGATTCACCATTATATTGAAAGACAAAACCTTACCATAGATGTTGCATTGGGAACTGCACTAATTGACATGTATGCCAAGTGTGGAAATATTGACAGGGCCCTCCAGGTTTTTGAAGAGTTTCCTCAAAGAAATTGTTTGACCTGGACAGCTATTATTTGTGGTCTAGCACTTAATGGCAATTCTCGTGATGCCATATCATATTTCTCTAGAATGATTCATATTGGATTGTTGCCTGATGAGATCACCTTCCTTGGTGTCTTATCAGCTTGTTGCCATGGAGGCTTAGTTGAAAAAGGCCGCAAATATTTTTCCCAAATGATCTCTGAATTCAATATATCCCCTAAGCTTAAACACTACTCATGCATGGTGGACCTTCTTGGAAGGGCTGGTCATGTGGAGGAAGCTGAAGGGCTTATACGAAATATGCCTGTAGCGGCAGATGCTGCAGTGTGGGGTGCTTTATTCTCTGCCTGTCGTGTTCATGGCAATGTTCTAATTGGAGAGAGGGCAGCTTCAAAGCTTCTTGAGATGGATCCTCAAGATAGTGGGACCTATGTTCTGCTTGCCAGCATGTATAGTGAGGCGAAAATGTGGAAGGAGGCAAGGAGCGCAAGGAAAATGATGAAGGAAAGAGGAGTAGATAAGACTCCTGGTTGCAGCTCAATTGAGATCAATGGTGCTGTTCATGAGTTTGTGGCAAGGGATGCATCGCATCCACAGTCTGAATGGATTTATAATTGCTTGGTTTCTTTGACAAAGCAACTGGAGCTTCTCGGATTTACATCTGCTGTTCCAGCTTTTGGCGATAATTTTTCTTCCTAA 1821 0.4168 MILTGLIDNSFAASRLVAFCALSEAQTLEYCTKILYHTQEPNTFSWNVTIRGYIESGDMEGALLLYKKMLRCGGLKPDNHTYPLLLKACSCPSLSCVGHTILGHVLKFGFEFDIFVHNASITMLLSYGELEAAYDVFNKACVRDLVTWNSMINGCVKRGLANEAIEFYRRMEAEKVEPNEITMIGMVSSCSQLQDLNLGREFHYYIKEHGLELTIPLINALMDMYVKCGDLFAAQVLFDSMTQKTLVSWTTMVLGYARFGYLDVARQLLYEVPEKSVVPWNAIISGCVQAKHSKEALALFHEMQINTIEPDKVTMINCLSACSQLGALDIGIWIHHYIERQNLTIDVALGTALIDMYAKCGNIDRALQVFEEFPQRNCLTWTAIICGLALNGNSRDAISYFSRMIHIGLLPDEITFLGVLSACCHGGLVEKGRKYFSQMISEFNISPKLKHYSCMVDLLGRAGHVEEAEGLIRNMPVAADAAVWGALFSACRVHGNVLIGERAASKLLEMDPQDSGTYVLLASMYSEAKMWKEARSARKMMKERGVDKTPGCSSIEINGAVHEFVARDASHPQSEWIYNCLVSLTKQLELLGFTSAVPAFGDNFSS* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev02g2016 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 376 IPR002885 -
Aev02g2016 606 Pfam PPR repeat family 41 89 IPR002885 -
Aev02g2016 606 Pfam PPR repeat family 144 190 IPR002885 -
Aev02g2016 606 Pfam PPR repeat family 275 322 IPR002885 -
Aev02g2016 606 TIGRFAM PPR: pentatricopeptide repeat domain 415 447 IPR002885 -
Aev02g2016 606 TIGRFAM PPR: pentatricopeptide repeat domain 351 378 IPR002885 -
Aev02g2016 606 TIGRFAM PPR: pentatricopeptide repeat domain 146 180 IPR002885 -
Aev02g2016 606 TIGRFAM PPR: pentatricopeptide repeat domain 380 412 IPR002885 -
Aev02g2016 606 TIGRFAM PPR: pentatricopeptide repeat domain 45 78 IPR002885 -
Aev02g2016 606 TIGRFAM PPR: pentatricopeptide repeat domain 280 311 IPR002885 -
Aev02g2016 606 Gene3D Tetratricopeptide repeat domain 280 414 IPR011990 GO:0005515
Aev02g2016 606 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 593 - -
Aev02g2016 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Aev02g2016 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Aev02g2016 606 PANTHER OS10G0400250 PROTEIN 1 593 - -
Aev02g2016 606 Pfam PPR repeat 415 441 IPR002885 -
Aev02g2016 606 Pfam PPR repeat 351 378 IPR002885 -
Aev02g2016 606 Pfam PPR repeat 219 244 IPR002885 -
Aev02g2016 606 Pfam PPR repeat 380 408 IPR002885 -
Aev02g2016 606 Pfam PPR repeat 451 475 IPR002885 -
Aev02g2016 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 514 548 IPR002885 -
Aev02g2016 606 Pfam E+ motif 561 587 IPR046849 -
Aev02g2016 606 Gene3D Tetratricopeptide repeat domain 5 94 IPR011990 GO:0005515
Aev02g2016 606 Gene3D Tetratricopeptide repeat domain 99 196 IPR011990 GO:0005515
Aev02g2016 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Aev02g2016 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 447 IPR002885 -
Aev02g2016 606 Gene3D Tetratricopeptide repeat domain 415 576 IPR011990 GO:0005515
Aev02g2016 606 Gene3D Tetratricopeptide repeat domain 197 279 IPR011990 GO:0005515
Aev02g2016 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 42 76 IPR002885 -
Aev02g2016 606 Pfam E motif 494 556 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev02g2016 Aev-Chr2 21879942 21881762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev02g2016 26 593 Glycoside Hydrolase AT3G49170 29.597 2.41e-86 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev02g2016 - - adu:110273047 1048.88