Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0859 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0860 . . . . . . . . . . . . . . . . Car06g02817 Cca01g02097 . . . . . . . Gso3g0212 . . . . . . . . . . . . . . Mepo2g00737 Mesa13g04669 . Mtr4g0703 . Phco1g00964 . . Pste6g02444 Pumo7g01037 Rops4g01259 Seca4g11082 . Ssu4g2596 . . Trre7g00719 . Vian9g00849 Vifa2g05109 . Viun10g01610 Vivi5g01081 Vra9g1193
Pvu10g0861 . . . Aed2g0889 . . . . . . . Apr10g0913 . . . . . . . . . . . Gma01g01434 Gso1g1194 . . . . . . . . Lasa7g00620 . . . . . Mal7g0774 . . . . . . . Psa7g5300 . . . . Spst4g01654 . . Tpr4g0963 . Tsu06g00667 . . Vimu9g00599 . Vivi5g01082 .
Pvu10g0862 . . Adu02g02231 . . Ahy12g2349 Ahy2g2028 Aip02g02635 . Amo12g2770 . Apr10g1459 Arst2g02888 . . Bva02g00843 . Cca01g02098 . . . . . Gma01g01435 . Gso3g0211 . . . . . . . . . . . . . . . . . . . . Prci12g1697 . . Pumo7g01036 . . . . Sto1g1709 . . . . . . . . Vra9g1190
Pvu10g0863 Acco07g1146 Accr6g00985 Adu02g02232 Aed2g0888 Aev02g2028 Ahy12g2350 Ahy2g2031 Aip02g02636 Alju05g1121 Amo12g2771 . Apr10g0914 Arst2g02896 Bach6g00825 . Bva02g01703 Car06g02818 Cca01g02099 Dere11g0882 Dod07g1764 . Glsi07g1141 . Gma01g01436 Gso1g1196 . Lal14g0874 . . . . . . . . . . . Lja3g1408 Mal7g0773 Mepo2g00736 Mesa13g04671 Mibi04g1153 Mtr4g0702 . . Prci12g1281 Psa7g5301 Pste6g02439 Pumo7g01035 . . Spst4g01658 Ssu4g2597 Sto1g1704 Tpr4g0962 . . . Vifa2g05113 Vimu9g00590 . . Vra9g1187
Pvu10g0864 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0865 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0866 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lan9g0798 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0867 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0868 . . Adu02g02234 Aed2g0886 Aev02g2030 Ahy12g2354 Ahy2g2033 Aip02g02639 . . . Apr10g0916 Arst2g02899 Bach6g00822 Bisa06g0961 Bva02g01706 Car06g02822 Cca01g02100 Dere11g0885 Dod07g1767 . Glsi07g1138 . Gma01g01444 Gso1g1197 Gso3g0209 Lal14g0877 . . . . . Lapu10g01485 Lasa7g00618 . . . . Lja3g1409 Mal7g0770 Mepo2g00735 Mesa13g04672 . Mtr4g0701 . Phco1g00961 . . Pste6g02434 Pumo7g01034 Rops4g01262 Seca4g11088 Spst4g01660 Ssu4g2601 Sto1g1701 Tpr4g0959 Trre7g00717 Tsu06g00665 Vian9g00843 Vifa2g05116 Vimu9g00589 Viun10g01616 Vivi5g01085 Vra9g1186
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0859 Chr10 30754805 30755510 +
Pvu Pvu10g0860 Chr10 30852902 30857801 -
Car Car06g02817 Chr06 41098334 41127337 -
Cca Cca01g02097 Chr01 48302357 48322977 -
Gso Gso3g0212 Chr3 2938080 2958890 +
Mepo Mepo2g00737 Chr2 8871286 8891514 +
Mesa Mesa13g04669 Chr13 74221030 74240858 -
Mtr Mtr4g0703 Chr4 8802597 8823579 +
Phco Phco1g00964 Chr1 9867788 9905768 +
Pste Pste6g02444 Chr6 12011096 12042713 +
Pumo Pumo7g01037 Chr7 19624897 19646061 +
Rops Rops4g01259 Chr4 33483217 33514058 -
Seca Seca4g11082 Chr4 249137554 249143997 -
Ssu Ssu4g2596 Chr4 65960540 66008785 -
Trre Trre7g00719 Chr7 4684978 4700008 +
Vian Vian9g00849 Chr9 13449158 13487061 +
Vifa Vifa2g05109 Chr2 1527071953 1527075740 +
Viun Viun10g01610 Chr10 31104676 31147308 -
Vivi Vivi5g01081 Chr5 26766578 26789940 +
Vra Vra9g1193 Chr9 17661258 17699934 +
Pvu Pvu10g0861 Chr10 30863501 30879843 -
Aed Aed2g0889 Chr2 6864897 6884690 +
Apr Apr10g0913 Chr10 21610939 21632320 -
Gma Gma01g01434 Chr01 49140282 49167741 -
Gso Gso1g1194 Chr1 47450953 47481648 -
Lasa Lasa7g00620 Chr7 27247765 27268948 -
Mal Mal7g0774 Chr7 20235315 20260238 +
Psa Psa7g5300 Chr7 461084616 461105637 +
Spst Spst4g01654 Chr4 56204037 56218884 -
Tpr Tpr4g0963 Chr4 9241757 9261063 +
Tsu Tsu06g00667 Chr06 5803691 5816791 +
Vimu Vimu9g00599 Chr9 7309339 7348943 +
Vivi Vivi5g01082 Chr5 26768668 26789940 +
Pvu Pvu10g0862 Chr10 30903951 30908042 -
Adu Adu02g02231 Chr02 86867281 86870422 -
Ahy Ahy12g2349 Chr12 111173855 111177236 -
Ahy Ahy2g2028 Chr2 95115165 95117365 +
Aip Aip02g02635 Chr02 101314061 101317200 -
Amo Amo12g2770 Chr12 113531690 113534909 -
Apr Apr10g1459 Chr10 26996344 26999530 -
Arst Arst2g02888 Chr2 86313021 86315663 -
Bva Bva02g00843 Chr02 12256359 12257487 +
Cca Cca01g02098 Chr01 48325191 48327922 -
Gma Gma01g01435 Chr01 49167870 49168946 -
Gso Gso3g0211 Chr3 2933471 2936316 +
Prci Prci12g1697 Chr12 34617132 34620072 -
Pumo Pumo7g01036 Chr7 19578348 19594983 +
Sto Sto1g1709 Chr1 25145616 25148091 +
Vra Vra9g1190 Chr9 17559548 17567878 +
Pvu Pvu10g0863 Chr10 30909907 30912143 -
Acco Acco07g1146 Chr07 18046445 18047511 +
Accr Accr6g00985 Chr6 23031167 23033255 +
Adu Adu02g02232 Chr02 86873470 86875767 -
Aed Aed2g0888 Chr2 6861500 6863675 +
Aev Aev02g2028 Chr02 21945346 21947082 -
Ahy Ahy12g2350 Chr12 111179529 111181719 -
Ahy Ahy2g2031 Chr2 95141491 95143709 -
Aip Aip02g02636 Chr02 101319223 101321514 -
Alju Alju05g1121 Chr05 34658560 34660888 -
Amo Amo12g2771 Chr12 113538126 113543819 -
Apr Apr10g0914 Chr10 21638198 21640210 -
Arst Arst2g02896 Chr2 86335131 86337331 -
Bach Bach6g00825 Chr6 6227303 6228826 +
Bva Bva02g01703 Chr02 19469033 19470817 -
Car Car06g02818 Chr06 41135452 41137774 -
Cca Cca01g02099 Chr01 48330975 48338589 -
Dere Dere11g0882 Chr11 16732096 16734604 -
Dod Dod07g1764 Chr07 46474740 46477165 -
Glsi Glsi07g1141 Chr07 16500972 16503808 +
Gma Gma01g01436 Chr01 49181538 49183938 -
Gso Gso1g1196 Chr1 47497332 47501273 -
Lal Lal14g0874 Chr14 11150990 11159092 -
Lja Lja3g1408 Chr3 14949573 14958915 -
Mal Mal7g0773 Chr7 20231420 20233507 +
Mepo Mepo2g00736 Chr2 8856750 8860726 +
Mesa Mesa13g04671 Chr13 74261297 74262190 -
Mibi Mibi04g1153 Chr04 25566694 25568753 +
Mtr Mtr4g0702 Chr4 8795976 8799417 +
Prci Prci12g1281 Chr12 26638554 26641413 -
Psa Psa7g5301 Chr7 461118339 461120383 -
Pste Pste6g02439 Chr6 12000978 12002268 +
Pumo Pumo7g01035 Chr7 19563520 19568653 +
Spst Spst4g01658 Chr4 56273702 56275724 -
Ssu Ssu4g2597 Chr4 66012236 66016505 -
Sto Sto1g1704 Chr1 25115952 25118427 +
Tpr Tpr4g0962 Chr4 9233148 9235342 +
Vifa Vifa2g05113 Chr2 1527393116 1527395005 -
Vimu Vimu9g00590 Chr9 7188138 7191312 +
Vra Vra9g1187 Chr9 17462714 17464880 +
Pvu Pvu10g0864 Chr10 30972243 30973723 +
Pvu Pvu10g0865 Chr10 30974772 30975720 +
Pvu Pvu10g0866 Chr10 30976088 30976982 +
Lan Lan9g0798 Chr9 13291466 13293122 +
Pvu Pvu10g0867 Chr10 31081417 31082186 +
Pvu Pvu10g0868 Chr10 31138346 31139536 +
Adu Adu02g02234 Chr02 86905005 86906583 +
Aed Aed2g0886 Chr2 6846654 6847649 -
Aev Aev02g2030 Chr02 21961272 21962432 +
Ahy Ahy12g2354 Chr12 111227649 111229313 +
Ahy Ahy2g2033 Chr2 95170251 95171612 +
Aip Aip02g02639 Chr02 101410505 101412099 +
Apr Apr10g0916 Chr10 21657684 21658669 +
Arst Arst2g02899 Chr2 86366534 86368111 +
Bach Bach6g00822 Chr6 6212674 6213969 -
Bisa Bisa06g0961 Chr06 31866807 31867640 -
Bva Bva02g01706 Chr02 19484468 19485328 +
Car Car06g02822 Chr06 41562725 41564441 +
Cca Cca01g02100 Chr01 48354894 48356415 +
Dere Dere11g0885 Chr11 16769070 16769908 +
Dod Dod07g1767 Chr07 46505409 46507433 +
Glsi Glsi07g1138 Chr07 16471952 16473248 -
Gma Gma01g01444 Chr01 49339206 49340938 +
Gso Gso1g1197 Chr1 47648342 47650210 +
Gso Gso3g0209 Chr3 2914868 2916638 -
Lal Lal14g0877 Chr14 11168947 11170714 +
Lapu Lapu10g01485 Chr10 24912572 24913769 +
Lasa Lasa7g00618 Chr7 27017832 27018667 -
Lja Lja3g1409 Chr3 14962876 14964540 +
Mal Mal7g0770 Chr7 20156164 20157455 -
Mepo Mepo2g00735 Chr2 8836609 8837890 -
Mesa Mesa13g04672 Chr13 74278640 74279941 +
Mtr Mtr4g0701 Chr4 8780997 8782600 -
Phco Phco1g00961 Chr1 9823073 9823923 -
Pste Pste6g02434 Chr6 11969711 11971130 -
Pumo Pumo7g01034 Chr7 19544714 19546629 -
Rops Rops4g01262 Chr4 33554343 33556202 +
Seca Seca4g11088 Chr4 249183439 249184345 +
Spst Spst4g01660 Chr4 56311148 56321739 +
Ssu Ssu4g2601 Chr4 66084655 66086727 -
Sto Sto1g1701 Chr1 25080702 25081504 -
Tpr Tpr4g0959 Chr4 9212344 9213799 -
Trre Trre7g00717 Chr7 4651145 4652235 -
Tsu Tsu06g00665 Chr06 5792582 5793682 -
Vian Vian9g00843 Chr9 13268444 13269319 -
Vifa Vifa2g05116 Chr2 1528168597 1528169679 +
Vimu Vimu9g00589 Chr9 7169554 7170429 -
Viun Viun10g01616 Chr10 31188119 31189422 +
Vivi Vivi5g01085 Chr5 26887181 26888502 +
Vra Vra9g1186 Chr9 17442381 17443537 -