Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2582 ATGCTACTTTCGCCTTCTACACTTTCGCGCATAAACTTCCTCTCCAAGCCACCTTCGTTTTGCTCCGCACTCACCACTTTCCGCCGAAACCAACTTTCACTCAACTCGTCGTTCGCCGCATCTTTCCGTGGCGTCTCCTCCGCGTCGCAACGCGACGGCGATATAGTCGTTTTGGGCATCGAAACCAGCTGCGACGACACCGCCGCTGCTGTTGTGAGAAGCAACGGTGAAATTCTGAGCCAAGTGGTGTCTTCTCAGGCAGATCTGCTTGCGAAATATGGAGGTGTTGCTCCAAAAATGGCAGAAGAAGCTCACTCACAAGTTATAGACCAGGTTGTGCAAGATGCCCTTGATAAAGCTTATATGACTGAGAAGGATCTCTCTGCTGTTGCTGTTACTATTGGTCCTGGTTTGAGTCTCTGCCTTCGTGTGGGGGTGCAAAAAGCCCGGAGAATTGCTGGGGgatttaatttaccaattattGGCATACATCATATGGAGGCTCATGCTCTGGTGGTCAGGTTAATTGAGAAAGATTTGCAGTTTCCATTCATGGCCCTACTTATTTCAGgGGGACACAATTTACTCATTCTTGCACGTGATCTTGGGCAATACGTACAACTTGGAACTACAATAGATGATGCTATTGGTGAGGCGTATGACAAGACAGCAAAATGGCTTGGACTTGATATGAGGAGCAGTGGTGGTCCTGCTATAGAGAAGCTTGCTATGGACGGTAATGCTGAATCAGTCAAGTTTTCTATTCCAATGAAGCAGCACAAAGACTGCAACTTCTCCTATGCCGGTCTAAAAACCCAAGTAAGGCTGGCAATTGAGTCAAAAAAGatTGACACCAAAATTCCAATTTCTTCGGCAAGTAATGAAGATCGACTGTCACGGGCTGATATTGCTGCATCTTTTCAGCGAATTGCTGTGTTACATCTTGAGGAAAGGTGTGGACGAGCAATACAGTGGGCATTGAAGATGGAGCCTTCTATAAGACACTTGGTTGTCTCTGGTGGTGTTGCATCAAATCAATATGTTCGTGCCCGGCTTGATATGGTAGTGAAGAAGAATGGCCTGCAACTTGTATGCCCTCCTCCTCGGCTCTGTACTGATAATGGTGTAATGGTTGCTTGGACTGGTATTGAGCACTTCCGCATGGGAAGATATGACCCTCCTCCTCCTGCAGAAGAACCAGAAGACTTTGTGTATGATATACGCCCAAGGTGGCCACTGGGGGAAGAGTATGCGGAAGGAAAAAGTGAAGCACGTTCCTTAAGAACAGCTCGTATTCATCCTTCTCTTACATCTATAATTCAAGCATCATTGCAACAGTGA 1341 0.4631 MLLSPSTLSRINFLSKPPSFCSALTTFRRNQLSLNSSFAASFRGVSSASQRDGDIVVLGIETSCDDTAAAVVRSNGEILSQVVSSQADLLAKYGGVAPKMAEEAHSQVIDQVVQDALDKAYMTEKDLSAVAVTIGPGLSLCLRVGVQKARRIAGGFNLPIIGIHHMEAHALVVRLIEKDLQFPFMALLISGGHNLLILARDLGQYVQLGTTIDDAIGEAYDKTAKWLGLDMRSSGGPAIEKLAMDGNAESVKFSIPMKQHKDCNFSYAGLKTQVRLAIESKKIDTKIPISSASNEDRLSRADIAASFQRIAVLHLEERCGRAIQWALKMEPSIRHLVVSGGVASNQYVRARLDMVVKKNGLQLVCPPPRLCTDNGVMVAWTGIEHFRMGRYDPPPPAEEPEDFVYDIRPRWPLGEEYAEGKSEARSLRTARIHPSLTSIIQASLQQ 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2582 446 Gene3D - 183 366 - -
Ssu4g2582 446 TIGRFAM gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 58 379 IPR017861 -
Ssu4g2582 446 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE 54 425 IPR000905 -
Ssu4g2582 446 Pfam tRNA N6-adenosine threonylcarbamoyltransferase 77 380 IPR000905 -
Ssu4g2582 446 Hamap tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 55 413 IPR022450 GO:0002949
Ssu4g2582 446 Gene3D - 57 388 - -
Ssu4g2582 446 TIGRFAM T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 57 386 IPR022450 GO:0002949
Ssu4g2582 446 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 151 170 IPR017861 -
Ssu4g2582 446 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 208 229 IPR017861 -
Ssu4g2582 446 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 58 71 IPR017861 -
Ssu4g2582 446 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 130 150 IPR017861 -
Ssu4g2582 446 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 185 197 IPR017861 -
Ssu4g2582 446 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 336 345 IPR017861 -
Ssu4g2582 446 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE, MITOCHONDRIAL-RELATED 54 425 IPR022450 GO:0002949
Ssu4g2582 446 SUPERFAMILY Actin-like ATPase domain 57 380 IPR043129 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2582 K01409 - gmx:100784367 779.245