Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1406 ATGTCTCAGCTGAAGCAAATGTCGCACACCGATAGTGCCCCTTCGACGCCGGGGAAGTTCAAGATGGAGAAGGCCTCCTACTTCAACCGCGCACGGTGGCACGCCTCGCCGGCGAAGCTCGCCTTGTGGTCAATCGTTTTCTCGGCGGCGATCTTGATCTTCTTTTTCCGGTCGCCGGCGACGTCATCTATCTCCGCTGATCCCTCCCGGCGTTCCCTCAGGACATCCAACTGGGGCGGTCCGGTCTGGGAGAAGAAGGTTCGGTCCTCTGCCAGGGTCCGGTCCAGGAATGGATTCTCCGTTCTGGTCACCGGCGCCGCGGGTTTCGTCGGGACACATGTGTCCGCCGCCTTGAAGCGCCGCGGTGATGGGGTGCTGGGAATTGACAACTTCAATGACTACTATGACCCTTCTCTGAAGCGTTCACGCCAGGCCCTGTTGGAGCGTACCGGGGTGTTCATTGTGGAAGGTGATATCAATGATGCTGCGCTGTTGAAGAAGCTCTTTGAGGTTGTGCCGTTCACGCATGTGATGCATTTGGCTGCTCAGGCTGGTGTGAGGTATGCTATGGAGAATCCTGGCTCTTATGTGCATAGTAACATTGCTGGTTTTGTCAATTTGCTTGAGGTTTGTAAGACTGTGAACCCTCAACCTGCTATTGTGTGGGCTTCTTCTAGCTCAGTTTATGGGTTGAATACTAAGGTCCCCTTTTCTGAGAAGGATAGGACTGACCAGCCTGCTAGCTTGTATGCTGCTACTAAGAAGGCTGGTGAAGAGATTGCTCATACTTATAACCATATATATGGCCTTTCCTTGACCGGTTTGAGGTTCTTCACTGTTTATGGACCTTGGGGTAGGCCTGACATGGCCTACTTCTTCTTCACTAAGGATATTTTGAAGGGGAAGAGCATCCCCATCTTTGAGGCTGCGAATCATGGCACCGTTGCTAGGGATTTTACTTACATTGATGACATTGTGAGGGGCTGCTTGGGTGCGTTGGATACCGCGGAGAAGAGCACTGGCAGTGGCGGGAAGAAGAAGGGGCCGGCGCAGTTGAGGGTGTTCAATCTGGGGAATACTTCTCCTGTCCCGGTGAGTGAGCTTGTGAGCATTTTGGAGAGGCTGTTGAAGGTTAAGGCGAAGAGGAACGTGATGAGGTTGCCGCGGAATGGGGATGTGCAGTTTACTCATGCAAACATTAGCTACGCGCAGAGGGAGCTTGGGTATAAGCCTGTCACAGATCTTCAGGCTGGTTTGAAGAAATTTGTGCGGTGGTACCTGAACTACTATTCTGGTGGGAAGAAAGCTGTTGAGTGA 1317 0.5262 MSQLKQMSHTDSAPSTPGKFKMEKASYFNRARWHASPAKLALWSIVFSAAILIFFFRSPATSSISADPSRRSLRTSNWGGPVWEKKVRSSARVRSRNGFSVLVTGAAGFVGTHVSAALKRRGDGVLGIDNFNDYYDPSLKRSRQALLERTGVFIVEGDINDAALLKKLFEVVPFTHVMHLAAQAGVRYAMENPGSYVHSNIAGFVNLLEVCKTVNPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKSIPIFEAANHGTVARDFTYIDDIVRGCLGALDTAEKSTGSGGKKKGPAQLRVFNLGNTSPVPVSELVSILERLLKVKAKRNVMRLPRNGDVQFTHANISYAQRELGYKPVTDLQAGLKKFVRWYLNYYSGGKKAVE* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1406 438 PRINTS Nucleotide sugar epimerase signature 392 409 - -
Lja3g1406 438 PRINTS Nucleotide sugar epimerase signature 317 332 - -
Lja3g1406 438 PRINTS Nucleotide sugar epimerase signature 127 143 - -
Lja3g1406 438 PRINTS Nucleotide sugar epimerase signature 352 367 - -
Lja3g1406 438 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 97 431 IPR036291 -
Lja3g1406 438 PANTHER EPIMERASE-RELATED 10 436 - -
Lja3g1406 438 Gene3D - 100 432 - -
Lja3g1406 438 Pfam NAD dependent epimerase/dehydratase family 101 338 IPR001509 -
Lja3g1406 438 PANTHER UDP-GLUCURONATE 4-EPIMERASE 2-RELATED 10 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1406 Lja-Chr3 14848490 14850733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1406 4 436 Miscellaneous Gene Families AT4G00110 86.374 0.0 781
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1406 K08679 - gmx:100788739 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1406 3 14848490 14850733 Lja3g1406 3 14848490 14850733 ECH