Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01059 ATGTTACTTTCTCTCTCTACAATCGCGCTTCCATCCATTTCCCGCGTAAAATTCCTCCCAAAACCCTCACTCTTCCGTTCCACAATTCTCCGCCGAATCCAACTTCCCCACAAACATTCCACTCGCACCGTCTCTTGCGTCGCGAATGAACGACACAGCCAAACTCCTAAACGCCACGGAGACCTTGTCGTTTTGGGCATCGAAACTAGCTGCGACGATACTGCCGTTGCCGTTGTGAGAAGTGACGGTGAAATTTTGAGCCAAGTGGTTTCTTCTCAGGCAGATCTGCTAGTGAAGTACGGAGGTGTTGCTCCGAAAATGGCAGAAGAAGCTCACTCACAAGTCATAGACCAGGTTGTGCAAGAAGCCCTTGATAAGGCTTATATGACTGAGAAGGATCTCACCGCTGTTGCTGTCACTATTGGTCCCGGTTTAAGTCTTTGTCTTCGTGTGGGAGTGCAGAAAGCTCGGAGAATTGCTGGGGGCTTCAATTTACCAATTATTGGCATCCATCACATGGAGGCTCATGCTCTAGTGGCTAGGTTAATCGAGAAAGATTTGCAGTTTCCATTCATGGCCCTACTTATTTCCGGTGGACACAATCTACTCATTCTTGCACGGGATCTTGGGCAGTACATACAACTTGGAACTACAATAGATGATGCTATTGGTGAGGCTTATGACAAGTCAGCCAAATGGCTTGGACTTGACATGAGTAGAAGTGGTGGTCCTGCTATAGAGGAGCTTGCTAGGGAGGGCAATGATAAATCAGTTAATTTTTCTATTCCAATGAAGCAGCATAAAGATTGCAACTTCTCCTATGCTGGTTTAAAAACCCAAGTAAGGCTGGCAATTGAGTCCAAAAAGATCGATGCCAAAATTCCTATTTCTTCGGCAAGTTATGAAGATCGAATGTCACGGGCAGATATTGCTGCTTCCTTTCAGCGAATTGCAGTGTTACATCTCGAGGAAAGGTGTGAACGAGCAATACAATGGGCATTGAAGATGGAGCCTTCTATAAGACACTTGGTTATCTCAGGCGGTGTTGCATCAAATCAATATGTTAGGGCTCGGCTAGATACGGTTGTGAAGAAGAATGGCCTACAACTTGTATGCCCTCCTCCCCGGCTTTGTACCGACAACGGTGTAATGATTGCTTGGACTGGTATTGAGCACTTTCGCGTGGGAAGATATGACCCTCCACCTCCTGCAGAAGATCCAGAAGACTTTTTTTATGATGTACGCCCAAGATGGCCGCTGGGGGAAGAATATGCTGAAGGAAGAAGTGAATCTCGCTTCTTAAGATCGGCACGCATCCATCCTTCTCTTACATCTCTTATTAAAGCATCATTGGAGCAGTGA 1362 0.4626 MLLSLSTIALPSISRVKFLPKPSLFRSTILRRIQLPHKHSTRTVSCVANERHSQTPKRHGDLVVLGIETSCDDTAVAVVRSDGEILSQVVSSQADLLVKYGGVAPKMAEEAHSQVIDQVVQEALDKAYMTEKDLTAVAVTIGPGLSLCLRVGVQKARRIAGGFNLPIIGIHHMEAHALVARLIEKDLQFPFMALLISGGHNLLILARDLGQYIQLGTTIDDAIGEAYDKSAKWLGLDMSRSGGPAIEELAREGNDKSVNFSIPMKQHKDCNFSYAGLKTQVRLAIESKKIDAKIPISSASYEDRMSRADIAASFQRIAVLHLEERCERAIQWALKMEPSIRHLVISGGVASNQYVRARLDTVVKKNGLQLVCPPPRLCTDNGVMIAWTGIEHFRVGRYDPPPPAEDPEDFFYDVRPRWPLGEEYAEGRSESRFLRSARIHPSLTSLIKASLEQ 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01059 453 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 137 157 IPR017861 -
Vivi5g01059 453 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 192 204 IPR017861 -
Vivi5g01059 453 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 158 177 IPR017861 -
Vivi5g01059 453 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 215 236 IPR017861 -
Vivi5g01059 453 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 65 78 IPR017861 -
Vivi5g01059 453 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 343 352 IPR017861 -
Vivi5g01059 453 FunFam Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial 195 373 - -
Vivi5g01059 453 FunFam Probable tRNA N6-adenosine threonylcarbamoyltransferase 374 393 - -
Vivi5g01059 453 NCBIfam tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD 65 386 IPR017861 -
Vivi5g01059 453 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE 59 426 IPR000905 -
Vivi5g01059 453 Gene3D - 190 373 - -
Vivi5g01059 453 Pfam tRNA N6-adenosine threonylcarbamoyltransferase 84 387 IPR000905 -
Vivi5g01059 453 NCBIfam tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD 64 393 IPR022450 GO:0002949
Vivi5g01059 453 SUPERFAMILY Actin-like ATPase domain 64 388 IPR043129 -
Vivi5g01059 453 Hamap tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 62 420 IPR022450 GO:0002949
Vivi5g01059 453 Gene3D - 64 394 - -
Vivi5g01059 453 FunFam Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial 64 194 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01059 K01409 - gmx:100784367 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01059 5 25965663 25974061 Vivi5g01059 5 25965663 25974061 ECH