Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g0897 ATGCTACTTTCTCTCTCTACACTGGCGTCTCCTTCAACACTTTCGCGCCTAAACTTCTTCTCAAAGCCACCTTCGTTACTTTTCTCGGCACTCACCACTCTCCGCAGAAATCAACTTCCTCTCAATTCGTCGTTCGCCGCATCTTCCCGCCAAATCCCCTCCGCTTCGCAGCGCCACGGCGATGTTGTCGTTTTGGGCATCGAAACCAGCTGCGATGACACGGCCGCTGCTGTCGTGAGAAGCGACGGTGAAATTCTGAGCCAAGTGGTGTCTTCTCAGGCAGATCTGCTTGCGAAATATGGAGGTGTTTCTCCAAAAATGGCGGAAGAAGCTCATTCACAAGTTATAGACCAGGTTGTGCAAGAAGCCCTTGATAAAGCTTATATGACTGAGAAGGATCTCACTGCTGTTGCTGTCACTATTGGTCCTGGTTTGAGTCTCTGCCTTCGTGTAGGGGTGCAGAAAGCCCGGCGAATTGCTGGCGGATTTAATTTACCAATTATTGGCATACATCACATGGAGGCTCATGCTCTGGTGGCCAGGTTAGTTGAGAAAGATTTGCAGTTTCCATTCATGGTCTTACTTATTTCAGGGGGACACAATTTACTAGTTCTTGCTCGTGATCTTGGGCAATACATACAACTTGGAACTACAATAGATGATGCTATCGGTGAGGCATATGACAAGACAGCTAAATGGCTTGGACTGGATTTGAGGAGAAGTGGTGGTCCTGCTATTGAGGAGCTTGCTATGGAGGGTAATGCTAAATCAGTCAAGTTTTCTACTCCAATGAAGCAGCACAAAGACTGCAACTTCTCCTATGCTGGTCTGAAAACCCAAGTACGACTGGCAATTGAGTCCAAAAAGATTGATGCCAAAATTCCAATTTCTTTGGCAAGTGATGAAGATCGACTGTCACGGGCTGATATTGCTGCTTCTTTTCAGGTTGTCTCTGGTGGTGTTGCATCAAATCAATATGTTCGGTCTCGGCTTGACATGGTTGTGCAGAAGAATGGCCTGCAACTTGTATGCCCTCCTCCTCGGCTCTGCACTGATAATGGTGTAATGATTGCTTGGACTGGTATTGAGCACTTCCGCATGGGAAGATATGACCCTCCTCCTCCTGCAGAAGAACCAGAAGACTTTGTGTGCTTAAGACAACCTGAGAACTTTCCAATCAGCCACTTCTCCTTCTTCTCCAGTGCCTCCAAAGATCCCAACTTTCCAAACGGAACCGACAGAGAAGGGGATCAAGAGAAGCGCGGCGTTCGCATCTCCGTCATTTGGGGCACTGGAGAAACTTTCATAGTTCATTGTGAAGCCATGTTTTTTCTGTTTGTCAATAAACTCGGATTCAGATACCCTTTAAAAATTCCATTTTTCGGCCTCCTTTGTTGCTTACATACTCGTTCCTTGTCTCCTATTGTGAAACCCATCAATTGGAACACCTCTCACAGCTTTGTTCGAAACAATCCCCTCCTTTCGCTCTTGGAAAGGTGCGGGTCATTGGTCCAGTTAAAGCAAATCCAGGCTCGGATGGTCTTGACTGGCTTGATTAATGACGGCTTTGCCGCAAGTCGTGTTGTTGCGTTCTGTGCTTTATCGGAATCGCATGCTCTTGAGTATTGTACCAAAATCTTGTATTGGATCCGAGAACCGAATGTATTTTCTTGGAATGTGGCAATTAGGGGATATGTGGAAAGTGGCGACTTAGAAGGAGCTGTTTTGTTGTACAAGAGAATGTTGCGGTGTGGTACAATGAAGCCGGATAGTCATACTTACCCTTTGTTACTTAAGGCTTGTTCTTATCCATCTATGAATTGTGTTGGTTTTACTGTATTAGGGCATGTGTTGAGGTTTGGTTTTGAATTTGATATATTTGTGCACAATGCGTCAATCACGATGCTACTCTCATATGGAGCTTTGGAGGCAGCGTATGATGTGTTCAATAAAAGTTGTGTGAGAGACTTGGTAACATGGAATGCCATGATTACTGGGTGTGTTAGAAGAGGTCTAGCTAACGAGGCTAAAAAACTCTATTGCGAAATGGAGGCAGAGAAAGTGAAACCAAATGAGATTACAATGATTGGGATCATTTCTTCTTGTTCTCAATTGCAGGATTTGAGTCTTGGCAGAGAGTTTCATTGTCACGTTAAAGAACATGGCCTTGAGGTGACGATCCCACTCAATAATGCACTTATGGACATGTATGTGAAGTGTGGAGACCTTTTGGCTGCACGAGTTCTATTTGATAACATGGCACATAAGACCCTTGTTTCATGGACTACAATGGTTTTGGGATATGCCAGATTCGGTTTTGTGGATGTTGCTCGGGAGCTTTTGTATAAAATTCCAGAGAAGAGTGTTGTGCCTTGGAATGCAATCATCAGCGGCTGTGTCCAAGCTAAGAATAGTAAAGAGGCATTGGTTATGTTCCATGAAATGCAAATTAGGAAAATAGAACCTGATAAAGTGACCATGGTTAACTGCTTATCTGCATGCTCAAAACTAGGAGCTCTTGATGTAGGAATATGGATTCACCATTATATTGAAAGACACAATTTTTCTCTAGATGTTGCCTTGGGAACTGCACTAGTTGACATGTATGCCAAGTGTGGAAATATTGCAAGGGCTCTCCAGGTTTTCCAAGAGATTCCTCAAAGAAATTGTTTGACCTGGACAGCCATCATTTGTGGTTTAGCACTTCACGGAAATGCCCGTGATGCTATATCTTATTTCTCAAAAATGATTCGTAGTGGCTTAAAACCTGATCAGATCACATTTCTTGGTGTCTTATCAGCTTGTTGCCATGGAGGTTTAGTTGAAGAAGGCCGCAAATATTTTTCCCAAATGAGCTCTAAATTCAATATATCCCCTCAGCTTAAACACTACTCATCCATGGTGGATCTTTTAGGAAGGGCTGGTCATTTGGATGAAGCAGAAGAGTTTATTAAAAATATGCCGATTGAGGCAGATGCTGCTGTGTGGGGTGCTTTATTCTTTGCTTGCCGTGTTCATGGCAATGTTCTAATAGGAGAGAGGGCAGCTTTGAAGCTTCTTGAGATGGATCCTCAAGATAGTGGTATTTATGTTTTGCTTGCTAGCTTGTACAGTGAGGCAAAAATGTGGAAGGAGGCAAGAAATGCAAGGAAAATAATGAAGGAAAGAGGAGTAGAGAAGACTCCTGGTTGCAGTTCAATTGAGATCAATGGCATTGTGCATGAGTTCGTGGCAAGGGATGTGTTACATCCACAGTCTGAATGGATTTATGGATGGCAATTCAGAGCTGGAGTCAATAAAGATCATCAGTATATCACTGCCAAAGTGAACAATATGGCTTTGCTCAAGGAGTTACCTAAAACTGCCCAAATTCGCCTTGTGAGTTCACACCAGGAGGTTTATGAACCATGTGATGATTCTTTTGCACTGGTTGATGCTCTTCTAGCTGATCGCAATAACCTGTTGGAACATCATCCATCATTTTGCATGGAGATAGGCTGTGGTAGTGGATATGTCATTACTTCCCTTGCTCTTATTCTTGGGCAGGAAGATTGTGGCATCAACTACATTGCAACTGATATCAACCCACATGCAGTGAGGGTGACCCGTGAGACGTTGGAAGCACATGGGGTTGGTGCTGAGTTAATTGTAACAGACATTGCGTCGGGACTAGAGGACCGGCTGGCAGGGTTGATTGATGTTATGGTTGTGAACCCTCCTTATGTGCCTACCCCCGAAGATGAAGTGGGTGTTGAAGGTATTACATCATCTTGGGCCGGTGGGGAAAACGGTCGGAGGGTAATCGATAAAATTTTGCCCATTGTAGACCGTCTTTTGTCAGAAAAGGGATGGCTATACATGGTAACCCTCACAGCAAACAATCCTTCTGAGATATGCCAACAAATGAGAAAGAAAGGATATGCTTCTAAGATTGTTGTCCAAAGATCTACAGAGGAAGAAAGTCTCCATATCATCAAGTTCTGGCGGGAGTTTGATACTAAAAGGGATGAAACAGAGCAATCTTCTTCTGGGTTCATAGGCTCCTTGCTTAAACAAATCTCTCTACTTTCATATCGGAGAGGCACCAATAGCGACGACGACGACAACTACAACTGTTGA 4119 0.4394 MLLSLSTLASPSTLSRLNFFSKPPSLLFSALTTLRRNQLPLNSSFAASSRQIPSASQRHGDVVVLGIETSCDDTAAAVVRSDGEILSQVVSSQADLLAKYGGVSPKMAEEAHSQVIDQVVQEALDKAYMTEKDLTAVAVTIGPGLSLCLRVGVQKARRIAGGFNLPIIGIHHMEAHALVARLVEKDLQFPFMVLLISGGHNLLVLARDLGQYIQLGTTIDDAIGEAYDKTAKWLGLDLRRSGGPAIEELAMEGNAKSVKFSTPMKQHKDCNFSYAGLKTQVRLAIESKKIDAKIPISLASDEDRLSRADIAASFQVVSGGVASNQYVRSRLDMVVQKNGLQLVCPPPRLCTDNGVMIAWTGIEHFRMGRYDPPPPAEEPEDFVCLRQPENFPISHFSFFSSASKDPNFPNGTDREGDQEKRGVRISVIWGTGETFIVHCEAMFFLFVNKLGFRYPLKIPFFGLLCCLHTRSLSPIVKPINWNTSHSFVRNNPLLSLLERCGSLVQLKQIQARMVLTGLINDGFAASRVVAFCALSESHALEYCTKILYWIREPNVFSWNVAIRGYVESGDLEGAVLLYKRMLRCGTMKPDSHTYPLLLKACSYPSMNCVGFTVLGHVLRFGFEFDIFVHNASITMLLSYGALEAAYDVFNKSCVRDLVTWNAMITGCVRRGLANEAKKLYCEMEAEKVKPNEITMIGIISSCSQLQDLSLGREFHCHVKEHGLEVTIPLNNALMDMYVKCGDLLAARVLFDNMAHKTLVSWTTMVLGYARFGFVDVARELLYKIPEKSVVPWNAIISGCVQAKNSKEALVMFHEMQIRKIEPDKVTMVNCLSACSKLGALDVGIWIHHYIERHNFSLDVALGTALVDMYAKCGNIARALQVFQEIPQRNCLTWTAIICGLALHGNARDAISYFSKMIRSGLKPDQITFLGVLSACCHGGLVEEGRKYFSQMSSKFNISPQLKHYSSMVDLLGRAGHLDEAEEFIKNMPIEADAAVWGALFFACRVHGNVLIGERAALKLLEMDPQDSGIYVLLASLYSEAKMWKEARNARKIMKERGVEKTPGCSSIEINGIVHEFVARDVLHPQSEWIYGWQFRAGVNKDHQYITAKVNNMALLKELPKTAQIRLVSSHQEVYEPCDDSFALVDALLADRNNLLEHHPSFCMEIGCGSGYVITSLALILGQEDCGINYIATDINPHAVRVTRETLEAHGVGAELIVTDIASGLEDRLAGLIDVMVVNPPYVPTPEDEVGVEGITSSWAGGENGRRVIDKILPIVDRLLSEKGWLYMVTLTANNPSEICQQMRKKGYASKIVVQRSTEEESLHIIKFWREFDTKRDETEQSSSGFIGSLLKQISLLSYRRGTNSDDDDNYNC 1372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g0897 1372 Pfam Methyltransferase small domain 1161 1242 IPR007848 GO:0008168
Aed2g0897 1372 Gene3D Tetratricopeptide repeat domain 892 1075 IPR011990 GO:0005515
Aed2g0897 1372 CDD AdoMet_MTases 1164 1292 - -
Aed2g0897 1372 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 889 923 IPR002885 -
Aed2g0897 1372 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 788 822 IPR002885 -
Aed2g0897 1372 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 477 1097 - -
Aed2g0897 1372 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 656 690 IPR002885 -
Aed2g0897 1372 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1131 1316 IPR029063 -
Aed2g0897 1372 ProSitePatterns N-6 Adenine-specific DNA methylases signature. 1235 1241 IPR002052 GO:0003676|GO:0008168|GO:0032259
Aed2g0897 1372 TIGRFAM gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 65 358 IPR017861 -
Aed2g0897 1372 Pfam PPR repeat family 889 937 IPR002885 -
Aed2g0897 1372 Pfam PPR repeat family 787 835 IPR002885 -
Aed2g0897 1372 Pfam PPR repeat family 656 702 IPR002885 -
Aed2g0897 1372 Pfam PPR repeat family 553 601 IPR002885 -
Aed2g0897 1372 SUPERFAMILY Actin-like ATPase domain 64 360 IPR043129 -
Aed2g0897 1372 TIGRFAM PPR: pentatricopeptide repeat domain 792 823 IPR002885 -
Aed2g0897 1372 TIGRFAM PPR: pentatricopeptide repeat domain 892 924 IPR002885 -
Aed2g0897 1372 TIGRFAM PPR: pentatricopeptide repeat domain 658 692 IPR002885 -
Aed2g0897 1372 TIGRFAM PPR: pentatricopeptide repeat domain 927 959 IPR002885 -
Aed2g0897 1372 TIGRFAM PPR: pentatricopeptide repeat domain 556 585 IPR002885 -
Aed2g0897 1372 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 554 588 IPR002885 -
Aed2g0897 1372 Gene3D - 64 367 - -
Aed2g0897 1372 Gene3D - 190 345 - -
Aed2g0897 1372 Gene3D Vaccinia Virus protein VP39 1131 1336 IPR029063 -
Aed2g0897 1372 Hamap tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 62 383 IPR022450 GO:0002949
Aed2g0897 1372 Pfam PPR repeat 963 987 IPR002885 -
Aed2g0897 1372 Pfam PPR repeat 731 753 IPR002885 -
Aed2g0897 1372 Gene3D Tetratricopeptide repeat domain 707 844 IPR011990 GO:0005515
Aed2g0897 1372 Gene3D Tetratricopeptide repeat domain 610 706 IPR011990 GO:0005515
Aed2g0897 1372 Gene3D Tetratricopeptide repeat domain 491 608 IPR011990 GO:0005515
Aed2g0897 1372 TIGRFAM hemK_rel_arch: putative methylase 1133 1328 IPR004557 GO:0008168
Aed2g0897 1372 TIGRFAM T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 64 365 IPR022450 GO:0002949
Aed2g0897 1372 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 65 78 IPR017861 -
Aed2g0897 1372 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 137 157 IPR017861 -
Aed2g0897 1372 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 215 236 IPR017861 -
Aed2g0897 1372 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 315 324 IPR017861 -
Aed2g0897 1372 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 192 204 IPR017861 -
Aed2g0897 1372 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 158 177 IPR017861 -
Aed2g0897 1372 PANTHER OS10G0400250 PROTEIN 477 1097 - -
Aed2g0897 1372 Pfam E motif 1006 1068 IPR046848 -
Aed2g0897 1372 Pfam tRNA N6-adenosine threonylcarbamoyltransferase 84 359 IPR000905 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g0897 Aed-Chr2 6961737 6972820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g0897 559 987 Glycoside Hydrolase AT3G49170 27.149 2.19e-34 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g0897 - K19589 var:108319674 1187.56