Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0856 ATGTCGCACATAGACAGTGCCCCTTCGACCCCAGGGAAGTTCAAGATGGAGAAAGCCTCGTACTTTAACCGCGTGCGGTGGCACACCTCGCTGGCGAAGCTCGCCGTGTGGTCCTTCGTGTTTTTGGGCGCGATCTTGATCTTCTTTTTCCGGTCGCCGGCATCGTCGCCGGTGCCGGCGGACCTCTCGCGGAGGTCACTGAGGACCTACAACTGGGGCGGACCCGTCTGGGAGAAACGGGTCCGAGCCTCTGCCCGGGTCCGGTCCCGAAATGGGTTTGCCGTTTTGGTCACCGGGGCCGCTGGCTTTGTCGGCACCCATGTTTCTGCGGCGCTGAAACGCCGCGGAGATGGGGTTCTGGGAATTGACAATTTCAATGAGTATTACGACCCTTCACTAAAACGTGCACGCCAGTTGCTTTTGGAGCGCACTGGAGTGTACATAGTGGAAGGTGATATCAATGATGAAGCACTCTTGAGGAAGCTATTTGAGGTTGTTCCTTTCACTCATGTTATGCACTTGGCTGCTCAGGCTGGTGTGAGGTATGCCATGGAGAATCCTGGCTCTTATGTGCATAGCAACATTGCTGGTTTTGTGAATTTGCTCGAGGTTTGTAAGAGTGTGAATCCACAACCTGCTATTGTGTGGGCATCTAGTAGCTCAGTTTATGGACTCAACACTAAGGTTCCATTCTCTGAGAGGGATAGGACTGATCAGCCTGCTAGTTTGTATGCTGCCACTAAGAAGGCTGGTGAGGAGATTGCTCACACTTATAACCATATCTATGGTCTTTCATTGACTGGCTTGAGGTTCTTCACTGTTTATGGCCCTTGGGGTAGGCCTGATATGGCTTACTTCTTCTTCACTAGGGATATTTTGAAGGGGAAGGTGATACCTATATTTGAGGCTGCGAATCATGGCACCGTTGCAAGGGATTTTACTTATATTGATGATATTGTGAGGGGTTGTTTAGGGGCTCTGGATACGGCAGAAAAAAGCACAGGGAGTGGGGGGAAGAAGAGGGGGCCTGCACAGTTGAGGGTGTTCAATTTGGGTAATACTTCGCCTGTGCCGGTTAGTGATCTTGTGGGTATCTTGGAGAGGCTTCTGAAGATTAAGGCAAAGAGGAACATAATGAAGTTGCCACGGAATGGTGATGTTCAGTTTACACATGCCAACATCAGCTACGCTCAGAGGGAGCTCGGGTATAAGCCAACCACAGATCTGCATAGTGGTTTGAAGAAATTTGTGCGGTGGTACCTGAATTACTACTCTGGTGGGAAGAAAGCTGTTGAGTGA 1299 0.505 MSHIDSAPSTPGKFKMEKASYFNRVRWHTSLAKLAVWSFVFLGAILIFFFRSPASSPVPADLSRRSLRTYNWGGPVWEKRVRASARVRSRNGFAVLVTGAAGFVGTHVSAALKRRGDGVLGIDNFNEYYDPSLKRARQLLLERTGVYIVEGDINDEALLRKLFEVVPFTHVMHLAAQAGVRYAMENPGSYVHSNIAGFVNLLEVCKSVNPQPAIVWASSSSVYGLNTKVPFSERDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKVIPIFEAANHGTVARDFTYIDDIVRGCLGALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSDLVGILERLLKIKAKRNIMKLPRNGDVQFTHANISYAQRELGYKPTTDLHSGLKKFVRWYLNYYSGGKKAVE* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0856 432 PANTHER EPIMERASE-RELATED 4 430 - -
Pvu10g0856 432 Pfam NAD dependent epimerase/dehydratase family 95 332 IPR001509 -
Pvu10g0856 432 PRINTS Nucleotide sugar epimerase signature 121 137 - -
Pvu10g0856 432 PRINTS Nucleotide sugar epimerase signature 311 326 - -
Pvu10g0856 432 PRINTS Nucleotide sugar epimerase signature 346 361 - -
Pvu10g0856 432 PRINTS Nucleotide sugar epimerase signature 386 403 - -
Pvu10g0856 432 PANTHER UDP-GLUCURONATE 4-EPIMERASE 2-RELATED 4 430 - -
Pvu10g0856 432 Gene3D - 94 426 - -
Pvu10g0856 432 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 93 425 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0856 Pvu-Chr10 30539512 30541938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0856 1 430 Miscellaneous Gene Families AT4G00110 86.977 0.0 777
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0856 K08679 - gmx:100788739 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0856 10 30539512 30541938 Pvu10g0856 10 30539512 30541938 ECH