Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso1g1189 | ATGTTTGTCAATAAAGTCAGATTCAGATACCCTTTAAAAATCCCATTTTTAAGTGTCCTTTGTTGTTTACATGCTCGTTCCTTGCCTCCTTATGTGAAAGCCATCAATTGGAACACCTCCCACAACTTTGTTCAAAACAACCCCCTCCTTTCTCTCTTGGAAAGGTGCAAGTCATTGGACCAGTTAAAGCAAATCCAGGCTCAGACGGTCTTGACTGGCTTGGTTAACGATGGCTTTGCCATGAGTTGTCTTGTTGCATTCTGTGCTTTATTGGAGTCGGGATACGTGGAAAGCGAGGACTTGGAAGGAGCTGGTCTGTTGTACAAGAGGATGTTGCGATGTGGTGTTTTGAAGCCGGATAATCTCACTTACCCTTTGTTGATCAAGGATTGTTCTTGTCCATCTATGAATTGTGTTGGTTTTACAGTACTTGGGCATGTGTTGAGGTTGGGTTTTGAATTTGATATATTTGTGCACAATGCGTCAATCACTATGCTACTTTTGTATGTAGAATTGGAGGCAGCATACGATGTGTTCAATAAAGGTTGTGTGAGAGACTTGGTAACATGGAATGCGATGATTACTGGGTGTGTTAGAAGAGGACTAGCTAATGAGGCTAAAAAACTCTACCGGGAAATGGAGGCAGAGAAAGTGAAACCAAATGAGATTACAATGATTGGGATTGTCTCTGCTTGTTCTCAATTGCAGGATTTGAATCTTGGCAGGGAGTTTCATGATTATCTCAAAGAACATGGCCTTGAGTTGACAATCCCACTCAATAATTCACTTATAGACATGCATTTGAAGTGTGGAGACCTGTTGGCTGCATGGATTCTGTTTCTGGGTGTTGCTCCCGAGCTTTTGCATACTATTCCAGAGAAGAGTGTTGTGCCTTGGAATGCAATCATTAGTGGCTGTGTCCAAGCTAAGAATGGTAAAGACACATTCGATCTATTCAATGAAATGCAGATTAGGAAAATAGACCCTGATAACGTGACATCCACAGTCTGA | 1011 | 0.4174 | MFVNKVRFRYPLKIPFLSVLCCLHARSLPPYVKAINWNTSHNFVQNNPLLSLLERCKSLDQLKQIQAQTVLTGLVNDGFAMSCLVAFCALLESGYVESEDLEGAGLLYKRMLRCGVLKPDNLTYPLLIKDCSCPSMNCVGFTVLGHVLRLGFEFDIFVHNASITMLLLYVELEAAYDVFNKGCVRDLVTWNAMITGCVRRGLANEAKKLYREMEAEKVKPNEITMIGIVSACSQLQDLNLGREFHDYLKEHGLELTIPLNNSLIDMHLKCGDLLAAWILFLGVAPELLHTIPEKSVVPWNAIISGCVQAKNGKDTFDLFNEMQIRKIDPDNVTSTV* | 337 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso1g1189 | 336 | PANTHER | OS10G0400250 PROTEIN | 280 | 333 | - | - | |
| Gso1g1189 | 336 | PANTHER | OS10G0400250 PROTEIN | 34 | 91 | - | - | |
| Gso1g1189 | 336 | PANTHER | OS10G0400250 PROTEIN | 204 | 280 | - | - | |
| Gso1g1189 | 336 | PANTHER | OS10G0400250 PROTEIN | 94 | 252 | - | - | |
| Gso1g1189 | 336 | TIGRFAM | PPR: pentatricopeptide repeat domain | 299 | 330 | IPR002885 | - | |
| Gso1g1189 | 336 | TIGRFAM | PPR: pentatricopeptide repeat domain | 188 | 222 | IPR002885 | - | |
| Gso1g1189 | 336 | Pfam | PPR repeat family | 294 | 336 | IPR002885 | - | |
| Gso1g1189 | 336 | Pfam | PPR repeat family | 186 | 232 | IPR002885 | - | |
| Gso1g1189 | 336 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 186 | 220 | IPR002885 | - | |
| Gso1g1189 | 336 | Gene3D | Tetratricopeptide repeat domain | 141 | 238 | IPR011990 | GO:0005515 | |
| Gso1g1189 | 336 | Gene3D | Tetratricopeptide repeat domain | 22 | 136 | IPR011990 | GO:0005515 | |
| Gso1g1189 | 336 | Coils | Coil | 199 | 219 | - | - | |
| Gso1g1189 | 336 | Gene3D | Tetratricopeptide repeat domain | 239 | 336 | IPR011990 | GO:0005515 | |
| Gso1g1189 | 336 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 295 | 329 | IPR002885 | - | |
| Gso1g1189 | 336 | Pfam | PPR repeat | 93 | 116 | IPR002885 | - | |
| Gso1g1189 | 336 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 94 | 252 | - | - | |
| Gso1g1189 | 336 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 280 | 333 | - | - | |
| Gso1g1189 | 336 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 204 | 280 | - | - | |
| Gso1g1189 | 336 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 34 | 91 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso1g1189 | Gso-Chr1 | 47363347 | 47364503 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso1g1189 | 14 | 333 | Glycoside Hydrolase | AT3G49170 | 26.748 | 1.36e-22 | 97.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso1g1189 | - | - | gmx:113002409 | 686.026 |