Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11077 ATGGCCCAGGTGAGCAGAATCCACAATCTAGCTCAAGGCACTCAAATTTTTCATCATTCTTCCAAATCCAACAAACCCAAATCAGCAAACTCAATTTCATTGAGGTCACACCTTTGGGGCTCCCCAAAAACATGGGGCTTGAAGCATAAAAACGGCGTCTTTATGGGAAATGGTTATGTGGGTAACGGCAAATCGGGTATGTTTAAGGTTTCTGCCTCGGTTGCCGCCGCAGAGAAGCCGTCGACGGCGCCGGAGATCGTGTTGGAACCTATCAAGGAAATCTCTGGTACCATCACATTGCCTGGGTCCAAGTCTCTATCCAACCGAATTCTGCTTCTTGCTGCTCTCTCTGAGGGAACAACTGTCCTAGACAACTTGTTGAACAGCGAGGATGTTCATTACATGCTTGGTGCATTAAGGACCCTTGGACTGCGTGTGGAAGATGACAAAACAACCAAACAAGCAATTGTGGAAGGCTGTGGGGGATTATTTCCCACTGGTAGAGAATCTAAAGAGGAAGTTAATTTATTCCTCGGAAATGCTGGTACTGCAATGCGTCCTTTGACGGCAGCTGTGACTGCTGCAGGTGGAAATGCAAGCTACATACTTGATGGGGTTCCCCGAATGAGAGAGAGACCAATTGGGGATTTGGTGGCTGGTCTTAAGCAGCTTGGTGCAGATGTTGATTGTTTTCTTGGCACAAACTGTCCACCTGTTCGTGTAATTGGGAAGGGAGGACTTCCAGGGGGAAAGGTGAAACTGTCTGGATCAGTTAGCAGTCAATACCTGACTGCTTTGCTTATGGCAGCTCCTTTGGCTCTTGGTGATGTGGAGATTGAGATTATTGATAAACTGATTTCTGTTCCATATGTTGAGATGACTTTGAAGTTGATGGAGCGCTTTGGAGTCTCTGTGGAACACAGTGGTGATTGGGACAGGTTCTTGGTCCATGGAGGTCAAAAGTACAAGTCTCCTGGCAATGCTTTTGTTGAAGGTGATGCTTCAAGTGCCAGTTACTTCCTCGCTGGTGCAGCAGTTACTGGTGGGACTATCACTGTTAAAGGCTGTGGGACAAGCAGTTTACAGGGAGATGTAAAATTTGCTGAAGTTCTTGAAAAAATGGGAGCTAAAGTTACATGGACAGAAAACAGTGTTACTGTTACTGGACCTCCACGAGATTCTTCTGGTCGAAAAGTCTTGCAAGGAATTGATGTCAATATGAACAAGATGCCAGATGTTGCCATGACTCTTGCTGTTGTAGCACTATTTGCTAATGGTCCCACTGCTATAAGAGATGGATCACCTGGTATTTGGGCCAAGCCAGTCCTCACCAATGTCAGATTTTTTTGCAGCAAACTGCTCAGACACCCGTTTATCATTTGCTTCCTCTATTTTTCAGTGGCAAGTTGGAGAGTTAAAGAGACAGAGAGAATGATAGCAATCTGCACAGAACTCAGAAAGCTGGGAGCAACAGTTGAAGAAGGTCCTGATTACTGTGTGATAACTCCACCTGAGAAATTGAATGTCACATCTATAGACACATATGATGACCATAGAATGGCCATGGCATTTTCTCTTGCTGCTTGTGGAAATGTTCCAGTAACCATCAAGGATCCTGGTTGCACCAGGAAAACATTCCCTGATTACTTTGAAGTCCTTGAGAGGTTTACCAAGCATTAA 1680 0.4524 MAQVSRIHNLAQGTQIFHHSSKSNKPKSANSISLRSHLWGSPKTWGLKHKNGVFMGNGYVGNGKSGMFKVSASVAAAEKPSTAPEIVLEPIKEISGTITLPGSKSLSNRILLLAALSEGTTVLDNLLNSEDVHYMLGALRTLGLRVEDDKTTKQAIVEGCGGLFPTGRESKEEVNLFLGNAGTAMRPLTAAVTAAGGNASYILDGVPRMRERPIGDLVAGLKQLGADVDCFLGTNCPPVRVIGKGGLPGGKVKLSGSVSSQYLTALLMAAPLALGDVEIEIIDKLISVPYVEMTLKLMERFGVSVEHSGDWDRFLVHGGQKYKSPGNAFVEGDASSASYFLAGAAVTGGTITVKGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDSSGRKVLQGIDVNMNKMPDVAMTLAVVALFANGPTAIRDGSPGIWAKPVLTNVRFFCSKLLRHPFIICFLYFSVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLNVTSIDTYDDHRMAMAFSLAACGNVPVTIKDPGCTRKTFPDYFEVLERFTKH. 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11077 559 PANTHER AROM/DEHYDROQUINATE SYNTHASE 76 555 - -
Seca4g11077 559 ProSitePatterns EPSP synthase signature 2. 471 489 IPR023193 -
Seca4g11077 559 MobiDBLite consensus disorder prediction 13 32 - -
Seca4g11077 559 Pfam EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 89 433 IPR001986 GO:0016765
Seca4g11077 559 Pfam EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 467 553 IPR001986 GO:0016765
Seca4g11077 559 FunFam 3-phosphoshikimate 1-carboxyvinyltransferase 102 314 - -
Seca4g11077 559 CDD EPSP_synthase 94 556 IPR006264 GO:0003866|GO:0009073
Seca4g11077 559 ProSitePatterns EPSP synthase signature 1. 176 190 IPR023193 -
Seca4g11077 559 Gene3D Enolpyruvate transferase domain 314 559 IPR036968 GO:0016765
Seca4g11077 559 Gene3D Enolpyruvate transferase domain 102 313 IPR036968 GO:0016765
Seca4g11077 559 NCBIfam 3-phosphoshikimate 1-carboxyvinyltransferase 96 432 IPR006264 GO:0003866|GO:0009073
Seca4g11077 559 Hamap 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 92 559 IPR006264 GO:0003866|GO:0009073
Seca4g11077 559 SUPERFAMILY EPT/RTPC-like 86 555 IPR013792 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11077 Seca-Chr4 249070957 249077570 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11077 K00800 - gmx:100789268 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11077 4 249070957 249077570 Seca4g11077 4 249070957 249077570 ECH