Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01071 ATGGCCCAGTTGAGTAGAATCAACAATCTTGTTCAAAGCACCCAAATTTTCCACCATTCTTCCATTTCCCACAAACCCAAATCAGCAAAATCAGTTTCATTGAGGTCTAGCCTTCTGGGCTCCTCAAAATCATGCAGCTTGAAGCATAAAAATGGAGTCTTTGTTGGAAATTGTGATATGGGTAGGGGGAATTCCTTTGTGTTGAAGGCTTCTGCTTCGGTTGCCGCCGCCGAGAAGCCGTCGACGGCGCCGGAGATTGTGTTGGAACCCATTAGTGAAATTTCTGGGTCCATTACTTTGCCTGGATCAAAGTCTCTATCCAATCGAATTTTGCTTCTAGCTGCTCTCTCTGAGGGAACAACTGTTGTAGAGAACTTGTTAGACAGTGAGGATATTCATTACATGCTTGAGGCATTGAAGGTCCTTGGACTTCGAGTGGAAGACGACAAAACAACCAAACAAGCAGTTGTGGAAGGCAGCGGAGGATTATTCCCAACCGGTAGAGAATCTAAAGATGAAGTTAATTTGTTCCTTGGAAATGCTGGTACGGCAATGCGTCCTTTGACGGCCGCCTTGGTTGCTGCAGGTGGAAATACAAGATACATACTTGATGGGGTTCCCCGAATGAGAGAAAGACCAATTGGGGATTTGGTTTCCGGTCTTAAGCAACTTGGTGCTGATGTTGATTGTTTTCTTGGCACAAACTGTCCACCCGTTCGTATAATTGGAAAGGGAGGACTTCCAGGGGGAAAGGTGAAACTGTCCGGATCTATTAGCAGTCAGTACCTAACTGCTTTGCTTATGGCAGCACCATTGGCTCTAGGCGATGTTGAGATTGAGATTATTGATAAGCTGATTTCTGTTCCGTATGTTGAAATGACTTTAAAGTTGATGGAGCGCTTTGGAGTCTCTGTCGAACATAGTGATAATTGGGATAGGTTTTTGGTCCATGGAGGTCAAAAGTACAAGTCTCCTGGAAATGCTTTCGTTGAAGGTGATGCTTCAAGCGCCAGTTACTTCCTAGCCGGTGCAGCAGTTACCGGTGGAACCATCACCGTTATCGGCTGCGGAACAAGCAGTTTACAGGGAGATGTAAAATTCGCTGAAGTTCTCGAAAAGATGGGAGCTAAAGTTACATGGACAGAAAACAGTGTCACAGTTACGGGACCTCCACGAGATTCTTCTGGTCGGAAAGTATTGCAAGGCATTGATGTCAATATGAACAAGATGCCAGATGTTGCCATGACACTCGCCGTTGTTGCGCTATTTGCTAATGGTCCAACTACTATCAGAGACGTGGCAAGCTGGAGAGTTAAAGAGACAGAAAGAATGATAGCAATCTGCACTGAACTCAGAAAGCTCGGAGCAACAGTCGAAGAAGGTCCTGATTACTGTGTGATAACACCACCTGAGAAATTGAATGTCACATCGATAGACACGTACGACGATCATAGAATGGCGATGGCGTTTTCTCTTGCGGCTTGCGGCGATGTTCCGGTCACAATCAAGGATCCTGGTTGCACAAGGAAAACATTCCCTGACTACTTTCAAGTCCTTGAGAGGTTTACAAAGCATTAA 1578 0.4537 MAQLSRINNLVQSTQIFHHSSISHKPKSAKSVSLRSSLLGSSKSCSLKHKNGVFVGNCDMGRGNSFVLKASASVAAAEKPSTAPEIVLEPISEISGSITLPGSKSLSNRILLLAALSEGTTVVENLLDSEDIHYMLEALKVLGLRVEDDKTTKQAVVEGSGGLFPTGRESKDEVNLFLGNAGTAMRPLTAALVAAGGNTRYILDGVPRMRERPIGDLVSGLKQLGADVDCFLGTNCPPVRIIGKGGLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIIDKLISVPYVEMTLKLMERFGVSVEHSDNWDRFLVHGGQKYKSPGNAFVEGDASSASYFLAGAAVTGGTITVIGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDSSGRKVLQGIDVNMNKMPDVAMTLAVVALFANGPTTIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLNVTSIDTYDDHRMAMAFSLAACGDVPVTIKDPGCTRKTFPDYFQVLERFTKH 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01071 525 FunFam 3-phosphoshikimate 1-carboxyvinyltransferase 319 523 - -
Vivi5g01071 525 CDD EPSP_synthase 94 522 IPR006264 GO:0003866|GO:0009073
Vivi5g01071 525 Hamap 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 92 525 IPR006264 GO:0003866|GO:0009073
Vivi5g01071 525 ProSitePatterns EPSP synthase signature 2. 437 455 IPR023193 -
Vivi5g01071 525 ProSitePatterns EPSP synthase signature 1. 176 190 IPR023193 -
Vivi5g01071 525 NCBIfam 3-phosphoshikimate 1-carboxyvinyltransferase 96 524 IPR006264 GO:0003866|GO:0009073
Vivi5g01071 525 SUPERFAMILY EPT/RTPC-like 86 521 IPR013792 GO:0003824
Vivi5g01071 525 PANTHER AROM/DEHYDROQUINATE SYNTHASE 75 521 - -
Vivi5g01071 525 Gene3D Enolpyruvate transferase domain 102 314 IPR036968 GO:0016765
Vivi5g01071 525 Pfam EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 89 519 IPR001986 GO:0016765
Vivi5g01071 525 FunFam 3-phosphoshikimate 1-carboxyvinyltransferase 102 314 - -
Vivi5g01071 525 Gene3D Enolpyruvate transferase domain 319 524 IPR036968 GO:0016765
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01071 Vivi-Chr5 26134497 26137493 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01071 K00800 - gmx:100789268 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01071 5 26134497 26137493 Vivi5g01071 5 26134497 26137493 ECH