Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0902 ATGCTTATTCTGTTTGTCAGCAAATTCAGATACAAATATCCCTATTTCATCCCAACAACCCCATTTGTAGGCTTTCTTTGTTGTTTACACACTCGTTGTTTGTCTCCATGTGCCAAGCCCATCAATTGGAACACGTCCCACGGCTTTGTTCGAAACAACCCCCTCCTTTCTCTATTGGAAAGATGCCAATCCTTGGTCCAGCTAAGGCAAATCCAGGCTCAAATGATCTTGGCAGGCTTGATTGGCAATGGCTTTGCTGCAAGTCGCCTTGTTGCGTTTTGTGCTCTCTCTGAATCGCAAAACCTTGAGTATTGCACCAAAATATTGTTTCATATTGAAGAACCGAATGTATTTTCTTGGAATGTGACAATTAGGGGATATATGGAGAGTGGGAACTCAGAAGGAGCTATTATGTTGTACAAGAGACTGTTGCAATGTGGTATGTTGAAGCCGGATAATCATACTTACCCTTTATTGCTTAAAGCTTGTTCTTGTCCATCTCTGAATTTTGTTGGTCTTACTATAATTGGCCATGTGTTGAAGTTTGGTTTTGAATTTGATATATATGTGCACAATGCATTGATCACTATGCTGCTTTCGTGTGGAAAGCTGGAGGCAGCATACGATGTGTTCAATAAAGGTTGTGTGAGAGACCTAGTAACATGGAATTCCATGATTACTGGTTGTGTTAGAAGAGGACTAGCAAATGAGGCTATAAAGCTCTATCGGGAAATGGAGGCAGAGAAAGTGAAACCAAATGAAATCACGATGATTGGGATTGTTTCTTCTTGTTCTCAGTTGCAGGATTTGAATCTTGGGAGAGAATTTCATCGTTACGTCAAAGAACATAGGATCGAGTTGACAATCCCTCTCAATAATGCTCTAATGGACATGTATGTGAAGTGTGGGGACATGTTAGCTGCGCAAGTTCTATTTGATAACATGGCACATAAGACCCTTGTTTCATGGACTACAATGATTTTGGGATATGCCAGATTTGGTTTTCTGGATGTTGCTCGGGAGCTTTTATATAAAATTCCAGAGAAGAATGTTGTGCCATGGAATGCAATCATCAGTGGTTGCATCCAAGCTAAAAATAGTAAAGTAGCATTGGCTCTATTTCATGAAATGCAAATTAGTGAAATAGAACCTGATAAGGTAACCATGGTTAGCTGCCTGTCTGCATGCTCACAACTAGGAGCACTTGATGTAGGGATATGGATTCACCATTATATTGAAAGATACAATCTCCCTCTAGATGTTACCTTGGGAACTGCACTAGTTGACATGTATGCCAAGTGTGGAAATATTGCACAGGCCGTCCAGGTTTTCCAAGAGATTCCACACAAAAATTGCTTGACCTGGACAGCCATTATTTGTGGTTTAGCACTTCATGGTAATGCTCATGATGCTATATCCTATTTCGAAGAAATGATTCGTATTGGCTTAAAGCCTGATGAGATCACTTTTCTTGGGGTCTTATCAGCTTGTTGCCATGGAGGTTTAGTTGAAGAAGGCCGCAAATACTTTTCCCAAATGAGCTCTAAATTCAATATATCCCCTAAGCTTAAACATTTCTCATGCATGGTGGATCTTTTAGGAAGGGCAGGTCATTTGGAGGAAGCAGAAGTGCTCATTAGAAATATGCCAATAGCAACAGATGCTGCTGTGTGGGGTGCTTTATTCTTTGCTTGTCGTGTTCATTGCAATGTTCTAATTGGAGAGAGGGCAGCTTTGAAGCTTCTTGAGATGGATCCTTACGATAGCGGTATTTATGTTCTGCTTGCTAGCTTGTACAGTGAGGCAAAAATGTGGAAGGAGGCAAGGAGTGCATGGAAAGTAATGAAAGAGAGAGGAGTAGAAAAGACTCCAGGTTGTAGCTCAATTGAGATTAATGGCGTTGTGCATGAGTTCATGGCTAGGGATTTATTGCATCAACAGGCTGAATGGATTTATGAATGCTTGGCTTCGTTGACAAAACAACTGGAGTTTCTTGGATTTACATTTGACATTTCTGCTGATGGAGATATTCTGTTTTCCTAA 2043 0.4063 MLILFVSKFRYKYPYFIPTTPFVGFLCCLHTRCLSPCAKPINWNTSHGFVRNNPLLSLLERCQSLVQLRQIQAQMILAGLIGNGFAASRLVAFCALSESQNLEYCTKILFHIEEPNVFSWNVTIRGYMESGNSEGAIMLYKRLLQCGMLKPDNHTYPLLLKACSCPSLNFVGLTIIGHVLKFGFEFDIYVHNALITMLLSCGKLEAAYDVFNKGCVRDLVTWNSMITGCVRRGLANEAIKLYREMEAEKVKPNEITMIGIVSSCSQLQDLNLGREFHRYVKEHRIELTIPLNNALMDMYVKCGDMLAAQVLFDNMAHKTLVSWTTMILGYARFGFLDVARELLYKIPEKNVVPWNAIISGCIQAKNSKVALALFHEMQISEIEPDKVTMVSCLSACSQLGALDVGIWIHHYIERYNLPLDVTLGTALVDMYAKCGNIAQAVQVFQEIPHKNCLTWTAIICGLALHGNAHDAISYFEEMIRIGLKPDEITFLGVLSACCHGGLVEEGRKYFSQMSSKFNISPKLKHFSCMVDLLGRAGHLEEAEVLIRNMPIATDAAVWGALFFACRVHCNVLIGERAALKLLEMDPYDSGIYVLLASLYSEAKMWKEARSAWKVMKERGVEKTPGCSSIEINGVVHEFMARDLLHQQAEWIYECLASLTKQLEFLGFTFDISADGDILFS* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0902 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 486 516 IPR002885 -
Apr10g0902 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Apr10g0902 680 Pfam E motif 568 630 IPR046848 -
Apr10g0902 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 451 485 IPR002885 -
Apr10g0902 680 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 40 667 - -
Apr10g0902 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Apr10g0902 680 Gene3D Tetratricopeptide repeat domain 50 167 IPR011990 GO:0005515
Apr10g0902 680 Gene3D Tetratricopeptide repeat domain 274 406 IPR011990 GO:0005515
Apr10g0902 680 Gene3D Tetratricopeptide repeat domain 173 272 IPR011990 GO:0005515
Apr10g0902 680 SUPERFAMILY TPR-like 127 615 IPR011990 GO:0005515
Apr10g0902 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Apr10g0902 680 Gene3D Tetratricopeptide repeat domain 468 662 IPR011990 GO:0005515
Apr10g0902 680 PANTHER OS10G0400250 PROTEIN 40 667 - -
Apr10g0902 680 Pfam PPR repeat 526 549 IPR002885 -
Apr10g0902 680 Pfam PPR repeat 293 315 IPR002885 -
Apr10g0902 680 Pfam PPR repeat 190 213 IPR002885 -
Apr10g0902 680 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Apr10g0902 680 TIGRFAM PPR: pentatricopeptide repeat domain 220 254 IPR002885 -
Apr10g0902 680 TIGRFAM PPR: pentatricopeptide repeat domain 454 487 IPR002885 -
Apr10g0902 680 TIGRFAM PPR: pentatricopeptide repeat domain 354 385 IPR002885 -
Apr10g0902 680 TIGRFAM PPR: pentatricopeptide repeat domain 489 521 IPR002885 -
Apr10g0902 680 Pfam PPR repeat family 115 163 IPR002885 -
Apr10g0902 680 Pfam PPR repeat family 218 263 IPR002885 -
Apr10g0902 680 Pfam PPR repeat family 349 396 IPR002885 -
Apr10g0902 680 Pfam PPR repeat family 451 499 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0902 Apr-Chr10 21511329 21516109 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0902 73 670 Glycoside Hydrolase AT3G49170 29.934 3.32e-87 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0902 - - var:108319674 1133.63