Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1405 ATGGCCCAGGTGAGCAGAATCCACAATCTACCTCAAACCACTCCAATCCTTCACCATTCTTCCAACCCCCAGAAACCCAAATCAGCAAACTCAATTTCATTGAGGTCACACCTTTGGGGTTCCTCAAAATCATGGAGCTTGAAGCATAAAAATGGAGGCTTTATAGGAAATTGTGATGTGGGTAACGGCTATTCGGGTGTGTTTAAGGTTTCTGCCTCAGTTGCTGCGGCGGAGAAGCCGTCAACGGCGCCGGAGATCGTGTTGGAACCCATCAGGGAAATTGCTGGCACCATCACATTGCCTGGTTCCAAGTCTTTGTCCAATCGAATTCTGCTTCTTGCTGCTCTCTCTGAGGGAACAACTGTTGTAGACAACTTGTTGAATAGTGAGGATGTTCATTACATGCTTGGTGCATTGAGGACCCTTGGACTGCATGTGGAAGATGACAAGGCAACGAAACAAGCAATTGTGGAAGGCTGTGGGGGGTTGTTTCCCACTAGTGAATCTAAAGATGAAGTTAATTTATTCCTTGGAAATGCTGGTACCGCAATGCGACCTTTGACAGCAGCTGTGACTGCTGCAGGTGGAAACGCAAGCTACATACTTGACGGGGTTCCCCGGATGAGAGAGAGACCGATTGAGGATTTGGTAACTGGTCTTAAGCAGCTTGGTGCAGATGTTGATTGTTTTCTTGGTACAAAGTGTCCACCTGTCCGTGTAATTGGCAAGGGAGGACTTCCTGGGGGAAAGGTGAAACTGTCTGGATCAATTAGCAGTCAATACCTGACTGCTTTGCTTATGGCAGCTCCTTTGGCTCTTGGTGATGTGGAGATTGAGATTATTGATAAACTGATTTCTGTTCCATATGTTGAAATGACCTTGAAGTTGATGGAGCGCTTTGGAGTCACTGTGGAACACAGTGGTAATTGGGATAAGTTCTTGGTTCGTGGAGGTCAAAAGTACAAGTCTCCTGGCAATGCCTTTGTTGAAGGTGATGCTTCAAGTGCCAGTTACTTCCTAGCTGGTGCAGCAGTTACTGGTGGGACTATCACTGTTCATGGCTGTGGGACAAGCAGTTTGCAGGGAGACGTAAAATTTGCTGAAGTTCTTGAAAAGATGGGAGCTAAAGTTACATGGACAGAAAACAGTGTCACTCTTACCGGACCTCCACGAGATTCTTCTGGTCGTAAAGTCTTGCAAGGCATCGATGTCAATATGAACAAGATGCCAGATGTTGCAATGACACTTGCTGTTGTAGCCCTATTTGCTAATGGTCCCACTGCTATAAGAGATGTGGCAAGTTGGAGAGTTAAAGAGACAGAGAGAATGATAGCAATCTGCACAGAACTCAGAAAGCTAGGAGCAACAGTTGAAGAAGGTCCTGATTACTGTGTGATAACTCCACCTGAGAAATTGAATATCACATCAATAGACACGTACGATGACCATAGAATGGCCATGGCATTTTCTCTTGCTGCTTGTGGAGATGTTCCAGTAACCATCAAGGATCCTGGTTGCACAAGGAAAACATTCCCTGACTATTTTGAAGTCCTTGAGAGGTTTACCAAGCATTAA 1575 0.4559 MAQVSRIHNLPQTTPILHHSSNPQKPKSANSISLRSHLWGSSKSWSLKHKNGGFIGNCDVGNGYSGVFKVSASVAAAEKPSTAPEIVLEPIREIAGTITLPGSKSLSNRILLLAALSEGTTVVDNLLNSEDVHYMLGALRTLGLHVEDDKATKQAIVEGCGGLFPTSESKDEVNLFLGNAGTAMRPLTAAVTAAGGNASYILDGVPRMRERPIEDLVTGLKQLGADVDCFLGTKCPPVRVIGKGGLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIIDKLISVPYVEMTLKLMERFGVTVEHSGNWDKFLVRGGQKYKSPGNAFVEGDASSASYFLAGAAVTGGTITVHGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTLTGPPRDSSGRKVLQGIDVNMNKMPDVAMTLAVVALFANGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLNITSIDTYDDHRMAMAFSLAACGDVPVTIKDPGCTRKTFPDYFEVLERFTKH* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1405 524 Pfam EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 89 518 IPR001986 GO:0016765
Lja3g1405 524 PANTHER AROM/DEHYDROQUINATE SYNTHASE 1 524 - -
Lja3g1405 524 Hamap 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 92 524 IPR006264 GO:0003866|GO:0009073
Lja3g1405 524 ProSitePatterns EPSP synthase signature 2. 436 454 IPR023193 -
Lja3g1405 524 MobiDBLite consensus disorder prediction 10 33 - -
Lja3g1405 524 Gene3D Enolpyruvate transferase domain 320 521 IPR036968 GO:0016765
Lja3g1405 524 CDD EPSP_synthase 94 521 IPR006264 GO:0003866|GO:0009073
Lja3g1405 524 ProSitePatterns EPSP synthase signature 1. 175 189 IPR023193 -
Lja3g1405 524 TIGRFAM aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 96 523 IPR006264 GO:0003866|GO:0009073
Lja3g1405 524 Gene3D Enolpyruvate transferase domain 102 313 IPR036968 GO:0016765
Lja3g1405 524 PANTHER 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE, CHLOROPLASTIC 1 524 - -
Lja3g1405 524 SUPERFAMILY EPT/RTPC-like 86 520 IPR013792 GO:0003824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1405 K00800 - gmx:100789268 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1405 3 14837604 14844034 Lja3g1405 3 14837604 14844034 ECH