Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0715 ATGGTTATTTTATTTGGTAACAAGTTCAGATATAGATATAGATATTATTCCAGTTCAATTCCAACACCCCAAAATTTAGGTATCATAATTTCAATTTTTCATAATTCCAGTTCATTGTCACCAATTACCAAAACCATTAATTGGAACACTACTCACAGTTTTGTTAGGGAAAACCCTCTTCTTTCTATCCTAGAAAGATGCAAGTCACTTGTCCAGTTGAAGCAAATCCAGGCTCAAATGGTCTCGACGGGATTGATCGAAAATGGGTTTGCTGCGAGTCGCCTTGTCGCATTCTGCGCTTTATCTGAGTCAAAAGAACTTGATTATTGTACTAGAATATTGTATCGAATTAAAGAACTGAATGTCTTTTCTTGGAACGCTGCAATTAGGGGGTATGTTGAGAGTGGAGATATAGAAGGGGGTTTTATGTTGTATAAGAGAATGTTGTTAGGTGGTACGTTGAAACCGGATAATCATACTTACCCGTTGTTGCTTAAAGGTTGTTGTGGTCAATATTCAAGTTGTCTCGGTCTTGGTGTACTTGGGCATGTGTTGAAGTTTGGGTTTGAATGTGATATATTTGTGCACAATGCATCGATTACTATGCTACTCTCGTGTGGGGAGTTGAGTGTGGCTTATGATGTGTTTAATAAAAGTCGTGTGAGAGACCTCGTAACCTGGAATTCAATGATTACTGGGTGTGTTAAAAGGGGACTGGCAATTGAGGCTATCAAAATCTATAAGGAAATGGAGGCCGAGAAAGTGAGACCAAATGAGATTACGATGATTGGGATGATTTCTTCATGTTCTCAGGTGCAAGATTTGAATCTTGGCAAAGAATTTCATTGTTACATCAAAGAACACGGTCTTGAGTTTACAATTCCACTCACTAACGCACTTATGGACATGTATGTGAAGTGTGGGGAATTGTTGACTGCGCGAGTTCTATTTGATAACATGGCACAGAAGACTCTTGTTTCATGGACTACAATGGTTTTGGGATATGCCAGATTTGGTTTTCTGGATGTTGCTCGAGAGATTTTATATAAAATTCCAGAAAAGAGTGTTGTGCCATGGAATGCCATCATCAGTGGCTGTGTCCAGGCGAAGCAGGGTAAAGAGGCATTGGCTCTATTCCATGAAATGCAAATTCGTACAATAGAACCTGATAAAGTAACCATGGTTAACTGCCTGTCAGCATGTTCACAGCTAGGAGCACTTGATGTTGGAATATGGATTCACCATTATATTGAAAGACACAAGCTTTCTATTGATGTCGCCTTAGGAACTGCCCTAGTTGACATGTATGCCAAGTGTGGAAATATTGCAAGGGCGCTCCAGGTTTTCGAAGAGATTCCTCAAAGAAATTGTTTGACCTGGACAGCCGTGATTTGTGGTTTAGCACTTCATGGTAATGCTCAAGATGCTTTATCCTATTTCTCAAAAATGATTCATATTGGAATAGTGCCTGATGAGATCACCTTTCTTGGTGTGTTATCAGCTTGTTGTCATGGAGGTTTAGTTGAAGAAGGCCGCAAATATTTTTCCGAAATGAGCTCTAAATTCAATGTATCCCCTAAGCTTAAACACTACTCATGCATGGTGGACCTTTTAGGAAGGGCGGGTCATTTGGAGGAAGCAGAAGAACTCGTTAAAAACATGCCCATGGCAGCAGATGCTGCTGTTTTGGGTGCTTTATTCTTTGCCTGCCGTGTTTATGGAAATGTTCAAATTGGTGAGAGGACAGCTTTTAAGCTTCTTGAGATTGATCCTCAAGATAGTGGAAACTATGTTCTGCTTGCTAGCATGTACAGTGAGGCAAAAATGTGGAAGGAGGCAAGGAGTGCTAGGAAACTAATGAATGATAAAGGAGTAGAGAAGACTCCTGGTTGCAGCTTGGTTGAGATCAATGGCATTGTGCACGAGTTCGTGGTGAGGGATGTATCACATCCACAGTCTGAATGGATTTATGAATGTCTGGTTACGCTGACAAAACAACTCGAGCTTCTCGAATTAACATGA 2022 0.4036 MVILFGNKFRYRYRYYSSSIPTPQNLGIIISIFHNSSSLSPITKTINWNTTHSFVRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEINGIVHEFVVRDVSHPQSEWIYECLVTLTKQLELLELT* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0715 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 521 IPR002885 -
Mtr4g0715 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Mtr4g0715 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
Mtr4g0715 673 Pfam PPR repeat family 223 269 IPR002885 -
Mtr4g0715 673 Pfam PPR repeat family 354 401 IPR002885 -
Mtr4g0715 673 Pfam PPR repeat family 121 169 IPR002885 -
Mtr4g0715 673 Gene3D Tetratricopeptide repeat domain 221 326 IPR011990 GO:0005515
Mtr4g0715 673 Gene3D Tetratricopeptide repeat domain 492 636 IPR011990 GO:0005515
Mtr4g0715 673 Gene3D Tetratricopeptide repeat domain 58 220 IPR011990 GO:0005515
Mtr4g0715 673 Pfam PPR repeat 430 457 IPR002885 -
Mtr4g0715 673 Pfam PPR repeat 494 520 IPR002885 -
Mtr4g0715 673 Pfam PPR repeat 298 322 IPR002885 -
Mtr4g0715 673 Pfam PPR repeat 459 488 IPR002885 -
Mtr4g0715 673 Pfam PPR repeat 530 554 IPR002885 -
Mtr4g0715 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Mtr4g0715 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Mtr4g0715 673 Pfam E+ motif 640 666 IPR046849 -
Mtr4g0715 673 Pfam E motif 573 635 IPR046848 -
Mtr4g0715 673 Gene3D Tetratricopeptide repeat domain 360 491 IPR011990 GO:0005515
Mtr4g0715 673 PANTHER OS10G0400250 PROTEIN 44 669 - -
Mtr4g0715 673 TIGRFAM PPR: pentatricopeptide repeat domain 459 492 IPR002885 -
Mtr4g0715 673 TIGRFAM PPR: pentatricopeptide repeat domain 123 149 IPR002885 -
Mtr4g0715 673 TIGRFAM PPR: pentatricopeptide repeat domain 494 526 IPR002885 -
Mtr4g0715 673 TIGRFAM PPR: pentatricopeptide repeat domain 225 259 IPR002885 -
Mtr4g0715 673 TIGRFAM PPR: pentatricopeptide repeat domain 359 390 IPR002885 -
Mtr4g0715 673 TIGRFAM PPR: pentatricopeptide repeat domain 531 554 IPR002885 -
Mtr4g0715 673 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 44 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0715 Mtr-Chr4 8946695 8951802 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0715 112 668 Glycoside Hydrolase AT3G49170 29.715 1.58e-85 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0715 - - mtr:MTR_4g024860 1325.07