Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05105 ATGTCTCAGCTGAAGCAAATGTCGCACGCCGACAACAGTGCTCCGTCGACGCCGGGAAAGTTCAAGATGGAGAAAGCTTCGTACTTCAACCGTGTACGGTGGCACACTTCTCCGGCGAAGCTTGCTCTTTGGACCTTTGTTTTCTCGGCTGCAATCTTGATCTTCTTTTTCCGATCTCCGGCGACGTCATCTCTTCCGGCGGATCCTTCCCGGCGTTCTCTGAGAAGCCCTTCGAACTGGGGTGGTCCTGTTTGGGAGAAGCGCGTCCGTTCCTCCGCGAGAGTCCGGTCTAAAAACGGGTTCTCCGTTCTTGTGACCGGAGCCGCTGGTTTCGTCGGAACGCATGTGTCCGCGGCTCTTAAGCGGCGCGGAGACGGTGTTCTGGGACTTGATAACTTCAATGACTATTATGACCCTTCTTTGAAGCGTGCACGGCAAGCTCTTTTGGAGAGAACCGGTGTTTACATTGTGGAAGGTGATATCAATGATGCTGCTTTGTTAAGGAAGCTTTTTGAGGTTGTTCCTTTTACTCATGTCATGCATTTGGCTGCTCAAGCTGGTGTGAGGTATGCTATGGAGAATCCTGGTTCTTATGTTCATAGTAACATTGCTGGTTTTGTTAATTTGCTTGAGGTTTGTAAAACTGTTAATCCTCAACCTTCAATTGTTTGGGCTAGTTCTAGTTCTGTTTATGGATTGAATACTAAGGTACCTTTTTCTGAGAAGGATAGAACAGATCAACCTGCTAGTTTGTATGCCGCTACTAAGAAAGCCGGTGAAGAAATCGCGCATACTTATAATCATATATACGGTCTTTCGTTAACCGGTTTACGGTTTTTCACTGTTTATGGTCCTTGGGGTAGACCTGATATGGCTTACTTCTTTTTCACTAGAGATATTTTGAAGGGGAAGACGATTCCCATTTTCGAGGCAGCGAATCACGGTACCGTTGCTAGGGATTTTACTTATATAGATGATATCGTGAGAGGGTGTTTAGGTGCTTTGGATACTGCCGAGAAGAGTACCGGAAGTGGTGGGAAGAAGAGGGCGCCGGCTCAGTTGAGGGTTTTCAATTTGGGGAACACCTCGCCTGTTCCTGTTTCCGATCTTGTTAGCATTTTGGAGAGGCTGTTGAAGACTAAGGCGAAGAGGAATATTATGAAGTTGCCGAGGAATGGGGACGTCCAGTTTACTCATGCGAATATTAGCTATGCGCAGGGAGAGCTTGGTTATAAGCCGGTCACAGATCTGCAGACTGGTTTGAAGAAATTCGTGAGGTGGTACATGAATTACTATTCTGGTGGGAAGAAAGCTGTCGAGTGA 1323 0.4709 MSQLKQMSHADNSAPSTPGKFKMEKASYFNRVRWHTSPAKLALWTFVFSAAILIFFFRSPATSSLPADPSRRSLRSPSNWGGPVWEKRVRSSARVRSKNGFSVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKRARQALLERTGVYIVEGDINDAALLRKLFEVVPFTHVMHLAAQAGVRYAMENPGSYVHSNIAGFVNLLEVCKTVNPQPSIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKTIPIFEAANHGTVARDFTYIDDIVRGCLGALDTAEKSTGSGGKKRAPAQLRVFNLGNTSPVPVSDLVSILERLLKTKAKRNIMKLPRNGDVQFTHANISYAQGELGYKPVTDLQTGLKKFVRWYMNYYSGGKKAVE 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05105 440 PANTHER EPIMERASE-RELATED 85 433 - -
Vifa2g05105 440 Pfam NAD dependent epimerase/dehydratase family 103 340 IPR001509 -
Vifa2g05105 440 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 99 433 IPR036291 -
Vifa2g05105 440 Gene3D - 102 434 - -
Vifa2g05105 440 PRINTS Nucleotide sugar epimerase signature 319 334 - -
Vifa2g05105 440 PRINTS Nucleotide sugar epimerase signature 354 369 - -
Vifa2g05105 440 PRINTS Nucleotide sugar epimerase signature 394 411 - -
Vifa2g05105 440 PRINTS Nucleotide sugar epimerase signature 129 145 - -
Vifa2g05105 440 FunFam UDP-glucuronate 4-epimerase 3 102 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05105 Vifa-Chr2 1526947872 1526949194 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05105 4 438 Miscellaneous Gene Families AT4G00110 86.207 0.0 772
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05105 K08679 - gmx:100788739 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05105 2 1526947872 1526949194 Vifa2g05105 2 1526947872 1526949194 ECH