Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02093 ATGGCTCAGGTGAGCAGAGTTCACAGTCTTGCTCAAAGCACTCAGATTTTGCATCATTCTTCCAACCCCAACAAACCCAAATCGCCAAACTCGGTTTCATTGAGGTCACGCCTTTGTGGGGCCTCTAAATCTCGGAGCCTGATACATAAAAATGGAAGCTTTATGGGAAATTGTAACGTGGGTAAAGGAGATTCCGGTGTGTTTAAGGTTTTTGCCTCGGTCGCCGCCGCAGAGAAGCCGTCGACGGCGCCGGAGATAGTTTTGGAACCCATCAAAGACATATCGGGTACCATCACATTGCCAGGGTCTAAATCTCTGTCCAATCGAATTTTGCTTCTTGCTGCTCTCTCTGAGGGAACAACTGTTGTAGACAACTTGTTGTATAGTGAGGATATTCATTACATGCTTGGTGCATTGAGGACCCTTGGACTGCGTGTGGAAGATGATCAAACAACCAAACAAGCAATTGTGGAGGGCTGTGGGGGATTGTTTCCCACTGGGAGAGAATCTAAAGATGAAATCAATTTATTCCTTGGAAATGCTGGTACTGCAATGCGTCCTTTGACAGCAGCTGTGCTTGCTGCAGGTGGAAATGCAAGCTACATACTTGATGGAGTGCCCCGAATGAGAGAGAGACCAATTGGGGATTTGGTTTCTGGTCTTAAGCAGCTTGGTGCAGATGTTGATTGCATTCTTGGTACAAACTGTCCACCTGTTCGCGTAAATGGGAAGGGAGGACTTCCTGGGGGAAAGGTGAAACTGTCTGGATCAGTTAGCAGTCAATACCTGACTGCTTTGCTTATGGCAGCTCCTTTAGCTCTTGGTGATGTTGAAATTGAGATTGTTGATAAACTGATTTCTGTTCCATATGTTGAAATGACTCTGAAGTTGATGGAGCGCTTTGGGGTTTCTGTTGAGCACAGTGGTAATTGGGATAGATTCTTGGTCCATGGAGGCCAAAAGTACAAGTCTCCTGGCAATGCTTTTGTTGAGGGTGATGCTTCAAGTGCCAGTTACTTCCTAGCTGGTGCAGCAGTTACTGGTGGGACTATCACTGTTAAAGGCTGTGGCACAAGCAGTTTACAGGGAGATGTAAAATTTGCTGAAGTCCTTGAAAAGATGGGAGCTAAAGTTACATGGACAGAGACCAGTGTCACTGTTACTGGACCACCACGAGATTCTTCTGGTCGAAAAGTCTTACAAGGCGTTGATGTCAACATGAACAAGATGCCAGATGTTGCCATGACACTTGCTGTTGTTGCACTATTTGCTAATGGTCCCACTGCTATAAGAGATGTGGCAAGTTGGAGAGTTAAAGAGACAGAGAGGATGATAGCAATCTGCACAGAACTCAGAAAGCTGGGAGCGACGGTTGAAGAAGGTCCTGATTACTGTGTGATTACTCCACCTGAGAAATTGAATGTCACAGCTATAGACACATATGATGACCATAGAATGGCCATGTCATTCTCTCTTGCTGCTTGTGGGGATGTTCCAGTAACCATCAAGGATCCTGGCTGCACCAGGAAGACATTTCCTGATTACTTTGAAGTCCTTGAGAGGTTCACCAAGCATTGA 1578 0.4582 MAQVSRVHSLAQSTQILHHSSNPNKPKSPNSVSLRSRLCGASKSRSLIHKNGSFMGNCNVGKGDSGVFKVFASVAAAEKPSTAPEIVLEPIKDISGTITLPGSKSLSNRILLLAALSEGTTVVDNLLYSEDIHYMLGALRTLGLRVEDDQTTKQAIVEGCGGLFPTGRESKDEINLFLGNAGTAMRPLTAAVLAAGGNASYILDGVPRMRERPIGDLVSGLKQLGADVDCILGTNCPPVRVNGKGGLPGGKVKLSGSVSSQYLTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKLMERFGVSVEHSGNWDRFLVHGGQKYKSPGNAFVEGDASSASYFLAGAAVTGGTITVKGCGTSSLQGDVKFAEVLEKMGAKVTWTETSVTVTGPPRDSSGRKVLQGVDVNMNKMPDVAMTLAVVALFANGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLNVTAIDTYDDHRMAMSFSLAACGDVPVTIKDPGCTRKTFPDYFEVLERFTKH 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02093 525 Hamap 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 92 525 IPR006264 GO:0003866|GO:0009073
Cca01g02093 525 MobiDBLite consensus disorder prediction 1 35 - -
Cca01g02093 525 Pfam EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 89 519 IPR001986 GO:0016765
Cca01g02093 525 ProSitePatterns EPSP synthase signature 2. 437 455 IPR023193 -
Cca01g02093 525 PANTHER 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE, CHLOROPLASTIC 1 525 - -
Cca01g02093 525 ProSitePatterns EPSP synthase signature 1. 176 190 IPR023193 -
Cca01g02093 525 Gene3D Enolpyruvate transferase domain 320 524 IPR036968 GO:0016765
Cca01g02093 525 TIGRFAM aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 96 524 IPR006264 GO:0003866|GO:0009073
Cca01g02093 525 Gene3D Enolpyruvate transferase domain 102 314 IPR036968 GO:0016765
Cca01g02093 525 PANTHER AROM/DEHYDROQUINATE SYNTHASE 1 525 - -
Cca01g02093 525 SUPERFAMILY EPT/RTPC-like 86 521 IPR013792 GO:0003824
Cca01g02093 525 CDD EPSP_synthase 94 522 IPR006264 GO:0003866|GO:0009073
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02093 K00800 - gmx:100789268 941.414