Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01599 ATGGCCCAGGTGACCAGAGTGCACAATCTTGCTCAAAGCACTCAAATTTTTGGTCATTCTTCCAATCCCAACAAACCCAAATCGGTGAATTCGGTTTCATTGAGGCCACGCTTTTGGGGGGCCTCAAAATCTCGGAGCCTCTTGCATAAAAATGGAAGCTTTGTGGGAAATTGCAATGTGGGTATGAGAAATTCCGGCGTGTTTAAGGTTTCTGCCTCTGTCGCCGCCACAGAGAAGCCGTCGACGGCGCCGGAGATTGTGTTGGAACCCATCAAGGAAATCTCGGGTGCCATCACATTGCCAGGGTCTAAGTCTCTGTCCAATCGAATTCTGCTTCTGGCTGCTCTATCTGAGGGAACAACTGTTGTGGACAACTTGTTGTATAGTGAGGATATTCATTACATGCTTGGTGCATTAAGGACCCTCGGATTGCGTGTGGAAGATGACAAAACAACCAAGCAAGCAATTGTGGAAGGCTGTGGGGGATTGTTTCCCACTGCTGGAGAATCTAAAGATGAAATTAATTTATTCCTTGGTAATGCTGGTACTGCAATGCGTCCTTTGACAGCAGCTGTTGTTGCAGCTGGTGGAAATGCAAGCTATGTACTTGATGGAGTGCCTAGAATGAGAGAGAGGCCAATTGGTGATTTGGTTGCTGGTTTGAAGCAGCTTGGTGCAGATGTTGATTGTGTCCTTGGCACAAACTGTCCGCCTGTTCATGTGAATGGGAAGGGGGGACTTCCTGGTGGTAAGGTGAAACTGTCTGGATCAGTTAGCAGTCAATACTTGACTGCTTTGCTTATGGCAGCTCCTTTAGCTCTTGGAAACGTGGAAATTGAGATTGTTGATAAACTGATTTCTGTTCCATATGTTGATATGACTCTTAAGTTGATGGAGCGATTTGGAGTTTATGTGGAACACAGTGGTAATTGGGACAGGTTCTTGGTCCATGGAGGTCAAAAGTACAAGTCTCCTGGCAATGCTTTTGTTGAAGGTGATGCTTCAAGTGCCAGTTACTTCCTTGCTGGTGCAGCAGTCACTGGGGGGACTATGACTGTTGAGGGCTGTGGCACAAGCAGTTTACAGGGAGATGTAAAATTTGCCGAAGTTCTTGAAAAGATGGGAGCTCAAGTTACATGGACAGAGAACAGTGTCACTGTTACTGGACCACCACGAGATTCTTCTGGTCGAAAAGTCTTGCAAGGCATTGATGTGAATATGAACAAGATGCCAGATGTTGCCATGACACTTGCTGTTGTTGCACTATTTGCTAATGGTCCCACCACCATAAGAGATGTGGCGAGTTGGCGAGTTAAAGAGACAGAGAGGATGATAGCAATCTGCACTGAACTCAGAAAGCTAGGAGCAACGGTTGAAGAAGGTCCTGATTACTGTGTGATTACTCCTCCTGAGAAATTGAATGTAACATCTATAGACACATATGATGACCATAGAATGGCAATGGCATTCTCTCTTGCTGCTTGTGGAGATGTTCCTGTAACCATCAAGGATCCTGGTTGCACCAGGAAGACATTTCCTGACTACTTTGAAGTCCTTGAGAGGTTCACCAAGCACTAG 1578 0.4594 MAQVTRVHNLAQSTQIFGHSSNPNKPKSVNSVSLRPRFWGASKSRSLLHKNGSFVGNCNVGMRNSGVFKVSASVAATEKPSTAPEIVLEPIKEISGAITLPGSKSLSNRILLLAALSEGTTVVDNLLYSEDIHYMLGALRTLGLRVEDDKTTKQAIVEGCGGLFPTAGESKDEINLFLGNAGTAMRPLTAAVVAAGGNASYVLDGVPRMRERPIGDLVAGLKQLGADVDCVLGTNCPPVHVNGKGGLPGGKVKLSGSVSSQYLTALLMAAPLALGNVEIEIVDKLISVPYVDMTLKLMERFGVYVEHSGNWDRFLVHGGQKYKSPGNAFVEGDASSASYFLAGAAVTGGTMTVEGCGTSSLQGDVKFAEVLEKMGAQVTWTENSVTVTGPPRDSSGRKVLQGIDVNMNKMPDVAMTLAVVALFANGPTTIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLNVTSIDTYDDHRMAMAFSLAACGDVPVTIKDPGCTRKTFPDYFEVLERFTKH 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01599 525 CDD EPSP_synthase 94 522 IPR006264 GO:0003866|GO:0009073
Viun10g01599 525 SUPERFAMILY EPT/RTPC-like 86 521 IPR013792 GO:0003824
Viun10g01599 525 Gene3D Enolpyruvate transferase domain 102 314 IPR036968 GO:0016765
Viun10g01599 525 FunFam 3-phosphoshikimate 1-carboxyvinyltransferase 102 314 - -
Viun10g01599 525 Hamap 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 92 525 IPR006264 GO:0003866|GO:0009073
Viun10g01599 525 Gene3D Enolpyruvate transferase domain 320 524 IPR036968 GO:0016765
Viun10g01599 525 Pfam EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 89 519 IPR001986 GO:0016765
Viun10g01599 525 NCBIfam 3-phosphoshikimate 1-carboxyvinyltransferase 96 524 IPR006264 GO:0003866|GO:0009073
Viun10g01599 525 ProSitePatterns EPSP synthase signature 1. 176 190 IPR023193 -
Viun10g01599 525 PANTHER AROM/DEHYDROQUINATE SYNTHASE 77 521 - -
Viun10g01599 525 FunFam 3-phosphoshikimate 1-carboxyvinyltransferase 319 523 - -
Viun10g01599 525 ProSitePatterns EPSP synthase signature 2. 437 455 IPR023193 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01599 K00800 - gmx:100789268 946.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01599 10 30920486 30927280 Viun10g01599 10 30920486 30927280 ECH