Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01600 ATGTCACACATAGACAGTGCCCCTTCGACTCCAGGGAAGTTCAAGATGGAGAAAGCCACGTACTTTAATCGTGTGCGGTGGCACACCTCGCTGGCGAAGCTCGCCGTGTGGTCCTTCGTGTTTTTGGGCGCGATCTTGATCTTCTTTTTCCGGTCGCCGGCGTCGACGCCGGTTCCGGTGGACCTCTCACGGAGGTCACTGAGGACCTACAACTGGGGCGGACCCGTCTGGGAGAAACGGGTCCGAGCCTCTGCCCGGGTCCGGTCCCGAAATGGGTTTGCCGTTTTGGTCACCGGAGCCGCCGGCTTTGTCGGCACCCACGTTTCTGCGGCTCTGAAACGCCGCGGTGATGGGGTTCTGGGAATTGACAATTTCAATGACTACTACGACCCTTCACTGAAACGTGCGCGCCAGTTGCTCTTGGAGCGCACTGGAGTGTACATAGTCGAGGGTGATATCAATGATGAAGCACTCTTGAGGAAGCTTTTTGAGGTTGTTCCTTTCACTCATGTTATGCACTTGGCTGCTCAGGCTGGTGTGAGGTATGCCATGGAGAATCCTGGCTCTTATGTGCATAGCAACATTGCTGGTTTTGTGAATTTGCTTGAGGTTTGTAAGAGTGTGAATCCACAGCCTGCTATTGTTTGGGCATCTAGTAGCTCAGTTTATGGACTCAACACTAAGGTTCCATTCTCTGAGAGGGATAGGACTGATCAGCCTGCTAGTTTGTATGCTGCCACTAAGAAGGCTGGTGAGGAGATTGCTCACACTTATAACCATATCTATGGTCTTTCATTGACTGGCTTGAGGTTCTTCACTGTTTATGGCCCTTGGGGTAGGCCTGATATGGCTTACTTCTTCTTCACAAGGGATATTCTGAAGGGGAAGGTGATACCTATATTTGAGGCTGCCAATCATGGCACCGTTGCTAGGGATTTTACTTACATTGATGATATTGTGAGGGGTTGTTTAGGGGCTCTGGATACTGCAGAAAAAAGCACAGGGAGTGGGGGGAAGAAAAGGGGGCCTGCACAGTTGAGGGTGTTCAATTTGGGAAATACTTCACCGGTGCCGGTTAGTGATCTTGTGGGCATTTTGGAGAGGCTTCTGAAGGCTAAGGCAAAGAGGAACATAATGAGGTTGCCACGGAATGGTGATGTTCAGTTTACACATGCCAACATTAGCTACGCGCAGAGAGAGCTTGGGTATAAGCCGACCACAGATCTGCATAGTGGTTTGAAGAAATTTGTGCGGTGGTACTTGAATTACTATTCTGATGTGAAGAAAGCTGATGAGTGA 1299 0.5019 MSHIDSAPSTPGKFKMEKATYFNRVRWHTSLAKLAVWSFVFLGAILIFFFRSPASTPVPVDLSRRSLRTYNWGGPVWEKRVRASARVRSRNGFAVLVTGAAGFVGTHVSAALKRRGDGVLGIDNFNDYYDPSLKRARQLLLERTGVYIVEGDINDEALLRKLFEVVPFTHVMHLAAQAGVRYAMENPGSYVHSNIAGFVNLLEVCKSVNPQPAIVWASSSSVYGLNTKVPFSERDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKVIPIFEAANHGTVARDFTYIDDIVRGCLGALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSDLVGILERLLKAKAKRNIMRLPRNGDVQFTHANISYAQRELGYKPTTDLHSGLKKFVRWYLNYYSDVKKADE 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01600 432 Gene3D - 94 426 - -
Viun10g01600 432 PANTHER EPIMERASE-RELATED 77 425 - -
Viun10g01600 432 PRINTS Nucleotide sugar epimerase signature 346 361 - -
Viun10g01600 432 PRINTS Nucleotide sugar epimerase signature 386 403 - -
Viun10g01600 432 PRINTS Nucleotide sugar epimerase signature 121 137 - -
Viun10g01600 432 PRINTS Nucleotide sugar epimerase signature 311 326 - -
Viun10g01600 432 Pfam NAD dependent epimerase/dehydratase family 95 332 IPR001509 -
Viun10g01600 432 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 93 425 IPR036291 -
Viun10g01600 432 FunFam UDP-glucuronate 4-epimerase 3 94 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01600 Viun-Chr10 30931019 30933452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01600 1 430 Miscellaneous Gene Families AT4G00110 86.047 0.0 767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01600 K08679 - gmx:100788739 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01600 10 30931019 30933452 Viun10g01600 10 30931019 30933452 ECH