Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2583 ATGATTATTCTGTTTGCCAACAAATTCAGATACATATACCCCTCAACAGCCCCACTTTTGGCCCTCCTTTATTGTTTACATACTCGTTCCTTGTCTCCTTGTGTCAAACCCATCAATTGGAACACCTCCCACGGCTTCGTCCGAAAGAGCCCCCTCCTTTCCCTCTTGGAAAGGTGCAAGTCCTTGCTCCAGTTAAGGCAAATCCAGGCTCAGATGGTCTTGACTGGCTTGATTGATAACAGCTTTGCCGCGAGCCGCCTTGTTGCATTCTGTGCTCTATCCGAATCGCGTGCCCTTGAGTATTGTACCAAGATGTTGTATAGTATCCGAGAACCGAATGTGTTTTCTTGGAATGTGACGATTAGGGGGTTTGTGGAGAGCGGGGAGTTAGAAGGAGCTGTGATGTTGTACAAGAGAATGTTGCGATGTGGGGTGTTGAAGCCGGATAATCATACTTACCCTTTGTTGCTTAAGGCTTGTTCTTGTCCGTCTATGAATTGTGTCGGTTTTACTGTACTTGGGCATGTTTTGAAGTTTGGTTTTGAATTGGATATATTTGTGCACAACGCGTCAATCACTATGCTACTCTCGTATGGAGATTTGGAGGCAGCGTGTGATGTGTTCAATAAAGGTTGTGTGAGAGACTTGGTGACATGGAATGCCATGATTACTGGGTGTGTTAGAAGAGGACTAGCTAATGAGGCTAAACAACTCTATCGGGAAATGGAGGCAGAGAAAGTGAAACCAAATGAGATTACAATGATTGGGATCATTTCTTCTTGTTCTCAATTGCAGGATTTGAATCTTGGCAGAGAGTTTCATCGTTATATCAAGGAACATGGCCTTGAGTTGACAATCCCTCTCAATAATGCACTTATGGACATGTATGTGAAGTGTGGAGACCTATTGGCTGCACGAGTTCTTTTCAATAACATGGCACATAAGACCCTTGTTTCATGGACTACAATGGTTTTGGGATATGCCAGATTTGGTTTTCTGGATGTTGCTCGGGAGCTTTTGTATAAAATTCCAGAGAAGAGTGTTGTGCCTTGGAATGCAATCATTAGTGGCTGTCTCCAAGCTAAGAATAGTAAAGAGGCATTGGCTCTATTCCATGAAATGCAAGTTAGTAAAATAGAACCTGATAAAGTGACCATGGTTAACTGCCTATCGGCATGCTCACAACTAGGAGCACTTGATGTAGGAATGTGGATTCACCATTATATTGAAAAACACAATCTTTTTCTAGATGTTGCCTTGGGAACTGCACTAGTTGACACGAGCGTCTGCCTTTATAGTGATAAAGAAGCAAGACCTTTCCTGTCATATGTTGTTGATCTGTTACAGAACCAGAACCAACCATGGTTGGAGTGTTGGACTCCTATGCTAAATGACTTCATGGCTTGGTTCTATACTCTACTGGAAGAAGAGGCTTTGTGCAAAGAGTTGCCTAGAACTGCCCAAATTCGCCTTGTGAGTTCACACCAGGAGGTTTATGAACCATGTGATGATTCTTTTGCACTGGTTGATGCTCTTCTGGCCGATCGCAATAACCTGTTGGAACATCATCCAACATTGTGTATGGAGATAGGCTGTGGTAGTGGATATGTTATTACTTCCCTTGCTCTTATTCTTGGGCAGGAAGGTTGTGGTGTCAATTATATTGCAACCGATATCAACCCACATGCAGTGAGGGTGACTCGGGAGACGTTGGAAGCACATGGGGTGGGTGCAGAGTTGATAGTAACAGATATTGCATCGGGACTAGAGGAGCGTCTAGCAGGGTTGGTTGATGTTATGGTTGTGAACCCTCCTTATGTGCCTACCCCTGAAGATGAAGTGGGTGTTGAAGGTATTACCTCATCTTGGGCTGGGGGGGAGAACGGCCGGAGTGTAATCGATAGAATTTTGCCTGTTGCAGACCGTCTAATGTCAGAAAAGGGATGGTTGTACATGGTCACCCTCACAGCAAACAATCCTTCTGAGATATGTCGtgaaatgagaaagaaaggaTATGCTTCTAAGATTGTTGTCCAAAGATCGACAGAGGAAGAAAGTCTCCATATCATCAAGTTCTGGCGGGATTTTGATACTGAAGTAAATGAAACGGATCAATCTGCTTCTGGGTTCATAGGTTCCTTGCTTACACAAATTCCTCTATTTTCATATTGGAGAGGCACCAGTAGTGACAACAAGTGTTGA 2202 0.4346 MIILFANKFRYIYPSTAPLLALLYCLHTRSLSPCVKPINWNTSHGFVRKSPLLSLLERCKSLLQLRQIQAQMVLTGLIDNSFAASRLVAFCALSESRALEYCTKMLYSIREPNVFSWNVTIRGFVESGELEGAVMLYKRMLRCGVLKPDNHTYPLLLKACSCPSMNCVGFTVLGHVLKFGFELDIFVHNASITMLLSYGDLEAACDVFNKGCVRDLVTWNAMITGCVRRGLANEAKQLYREMEAEKVKPNEITMIGIISSCSQLQDLNLGREFHRYIKEHGLELTIPLNNALMDMYVKCGDLLAARVLFNNMAHKTLVSWTTMVLGYARFGFLDVARELLYKIPEKSVVPWNAIISGCLQAKNSKEALALFHEMQVSKIEPDKVTMVNCLSACSQLGALDVGMWIHHYIEKHNLFLDVALGTALVDTSVCLYSDKEARPFLSYVVDLLQNQNQPWLECWTPMLNDFMAWFYTLLEEEALCKELPRTAQIRLVSSHQEVYEPCDDSFALVDALLADRNNLLEHHPTLCMEIGCGSGYVITSLALILGQEGCGVNYIATDINPHAVRVTRETLEAHGVGAELIVTDIASGLEERLAGLVDVMVVNPPYVPTPEDEVGVEGITSSWAGGENGRSVIDRILPVADRLMSEKGWLYMVTLTANNPSEICREMRKKGYASKIVVQRSTEEESLHIIKFWRDFDTEVNETDQSASGFIGSLLTQIPLFSYWRGTSSDNKC 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2583 733 TIGRFAM hemK_rel_arch: putative methylase 498 693 IPR004557 GO:0008168
Ssu4g2583 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 147 IPR002885 -
Ssu4g2583 733 ProSitePatterns N-6 Adenine-specific DNA methylases signature. 600 606 IPR002052 GO:0003676|GO:0008168|GO:0032259
Ssu4g2583 733 Pfam PPR repeat 290 312 IPR002885 -
Ssu4g2583 733 TIGRFAM PPR: pentatricopeptide repeat domain 116 146 IPR002885 -
Ssu4g2583 733 TIGRFAM PPR: pentatricopeptide repeat domain 351 382 IPR002885 -
Ssu4g2583 733 TIGRFAM PPR: pentatricopeptide repeat domain 217 251 IPR002885 -
Ssu4g2583 733 Pfam PPR repeat family 215 261 IPR002885 -
Ssu4g2583 733 Pfam PPR repeat family 346 393 IPR002885 -
Ssu4g2583 733 Pfam PPR repeat family 112 160 IPR002885 -
Ssu4g2583 733 PANTHER OS01G0913400 PROTEIN-RELATED 35 426 - -
Ssu4g2583 733 Gene3D Tetratricopeptide repeat domain 170 268 IPR011990 GO:0005515
Ssu4g2583 733 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 496 680 IPR029063 -
Ssu4g2583 733 Coils Coil 228 248 - -
Ssu4g2583 733 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 35 426 - -
Ssu4g2583 733 Pfam Methyltransferase small domain 525 607 IPR007848 GO:0008168
Ssu4g2583 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Ssu4g2583 733 Gene3D Vaccinia Virus protein VP39 496 700 IPR029063 -
Ssu4g2583 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Ssu4g2583 733 CDD AdoMet_MTases 529 657 - -
Ssu4g2583 733 Gene3D Tetratricopeptide repeat domain 30 166 IPR011990 GO:0005515
Ssu4g2583 733 Gene3D Tetratricopeptide repeat domain 269 438 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2583 Ssu-Chr4 65542972 65547475 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2583 125 467 Glycoside Hydrolase AT3G49170 25.000 5.12e-22 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2583 - K19589 var:108319674 751.51