Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05101 ATGCTACTTTTTCTCTCTACGATTGCGCTTCCATCAATTTCCCGCGTAAAATTCCTCTCCAAACCCTCCCTCTCCACTTTCACATCTCTCCGCCGAATCCAACTTCCCCACAAACATTCCACCCGCACCGTCTCCTGCGTCGCGAATGAACTACACAACCAAACTCCAAAACGCGAAGGCGACCTTGTCGTTTTGGGCATCGAAACTAGCTGCGACGACACTGCCGTCGCCGTCGTGAGAAGTGACGGTGAAATTTTGAGTCAAGTGGTGTCTTCTCAGGCAGACCTGCTAGTGAAGTATGGAGGTGTTGATCCGAAAATGGCAGAAGAAGCTCACTCACAAGTGATAGACCAGGTTGTGCAAGAAGCCCTTGATAAAGCTTATATGACTGAGAAGGATCTCACAGCTGTTGCTGTCACTATTGGTCCTGGTTTAAGTCTCTGCCTTCGTGTGGGAGTGCAGAAAGCTCGGAGAATTGCCGGGGGCTTCAATTTACCAATTATTGGCATCCATCACATGGAGGCTCATGCTCTAGTGGCTAGGTTAATCGAGAAAGATTTGCAGTTTCCATTCATGGCCCTACTTATTTCAGGAGGACACAATCTACTCATTCTTGCACGGGATCTTGGGCAATACATACAGCTTGGAACTACAATAGATGATGCTATTGGCGAGGCTTATGACAAGTTAGCAAAATGGCTTGGACTTGATATGAGTCGAAGTGGTGGTCCTGCTATAGAGGAGCTTGCTAGGGAGGGCAATGATAAATCGTTTAATTTTTCTATTCCAATGAAGCAGCATAAAGATTGCAACTTCTCCTATGCCGGTTTAAAAACCCAAGTAAGGCGGGCAATTGAGTCCAAAAAGATTGATGCCAAAATTCCTATTTCTTCAGCAAGTTATGAAGATCGAATGTCACGGGCTGATATGGCTGCTTCCTTTCAGCAGCGAATTGCAGTGTTACATCTCGAGGAAAGGTGTGAACGAGCAATACAATGGGCATTGAAGATGGAGCCTTCTATAAAACACTTGGTTATCTCAGGCGGTGTTGCATCAAACCAATATGTTAGGGCTCGGCTAGATGCGGTTGTGAAGAAGAATGGCCTACAACTTGTATGCCCTCCTCCCCGGCTTTGTACCGACAATGGTGTAATGATTGCTTGGACTGGTATTGAGCACTTTCGCGTGGGAAGATATGACCCTCCACCTCCTGCAGAAGACCCAGAAGACTTTTTTTATGATGTACGCCCAAGGTGGCCGTTGGGGGAAGAATATGCTGAAGGAAGAAGTGAATCTCGCTTCTTAAGATCGGCACGTCTTCATCCTTCTCTTACGTCTGAAATTCAAGCATCATTGGAACAGTGA 1365 0.4645 MLLFLSTIALPSISRVKFLSKPSLSTFTSLRRIQLPHKHSTRTVSCVANELHNQTPKREGDLVVLGIETSCDDTAVAVVRSDGEILSQVVSSQADLLVKYGGVDPKMAEEAHSQVIDQVVQEALDKAYMTEKDLTAVAVTIGPGLSLCLRVGVQKARRIAGGFNLPIIGIHHMEAHALVARLIEKDLQFPFMALLISGGHNLLILARDLGQYIQLGTTIDDAIGEAYDKLAKWLGLDMSRSGGPAIEELAREGNDKSFNFSIPMKQHKDCNFSYAGLKTQVRRAIESKKIDAKIPISSASYEDRMSRADMAASFQQRIAVLHLEERCERAIQWALKMEPSIKHLVISGGVASNQYVRARLDAVVKKNGLQLVCPPPRLCTDNGVMIAWTGIEHFRVGRYDPPPPAEDPEDFFYDVRPRWPLGEEYAEGRSESRFLRSARLHPSLTSEIQASLEQ 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05101 454 FunFam Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial 64 194 - -
Vifa2g05101 454 Pfam tRNA N6-adenosine threonylcarbamoyltransferase 84 388 IPR000905 -
Vifa2g05101 454 SUPERFAMILY Actin-like ATPase domain 64 389 IPR043129 -
Vifa2g05101 454 FunFam Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial 195 374 - -
Vifa2g05101 454 Gene3D - 190 374 - -
Vifa2g05101 454 Hamap tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 62 421 IPR022450 GO:0002949
Vifa2g05101 454 NCBIfam tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD 64 394 IPR022450 GO:0002949
Vifa2g05101 454 Gene3D - 64 395 - -
Vifa2g05101 454 FunFam Probable tRNA N6-adenosine threonylcarbamoyltransferase 375 394 - -
Vifa2g05101 454 NCBIfam tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD 65 387 IPR017861 -
Vifa2g05101 454 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 65 78 IPR017861 -
Vifa2g05101 454 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 344 353 IPR017861 -
Vifa2g05101 454 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 137 157 IPR017861 -
Vifa2g05101 454 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 158 177 IPR017861 -
Vifa2g05101 454 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 192 204 IPR017861 -
Vifa2g05101 454 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 215 236 IPR017861 -
Vifa2g05101 454 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE 60 427 IPR000905 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05101 Vifa-Chr2 1525892538 1525900047 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05101 K01409 - gmx:100784367 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05101 2 1525892538 1525900047 Vifa2g05101 2 1525892538 1525900047 ECH