Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1745 ATGATCTTAACAGGCTTAATAGACAATGGCTTTGCTGCAAGTCGCCTTGTCGCCTTCTGTGCTCTCTCAGAAGCACAAACTCTTGAATACTGCACAAAACTTTTGTATCATATACAAGAACCAAATGTTTTTTCTTGGAATGTGACCATTAGGGGATATATAGAAAGCGGGGACATGGAAGGAGCTCTTCTGTTGTACAAGAGAATGTTGTGGTGTGCTGGATCCAAGCCGGATAATCATACTTACCCTTTATTGCTTAAAGCATGTTCTTGTTCATCTCTAAGTTGTTTGGGTCATACTATACTTGGACATGTTTTGAAGTTTGGTTTTGAATTTGATATATTTGTGCACAATGCGTCCATCAGTATGTTACTGTCATATGGAGAGTTAGAGGCAGCATATGATGTCTTCAATAAAGGTTGTGTGAGAGACCTGGTAACCTGGAATTCCATGATTACTGGGTGTGTTAGAAGAGGAGTAGCAAATGAGGCTATAAAACTCTATCGGGAAATGGAGGCAGAGAAGGTGAAACCAAATGAGATTACAATGATTGGGATGGTTTCTTCTTGTTCTCAGTTGCAGGATTTGAATCTTGGCCGAGAATTTCATTATTACATCAAAGAACACGGGCTTGAGTTAACAATTCCACTTATTAATGCGCTTATGGACATGTATGTGAAGTGTGGAGACCTATTGGCCGCACAAGTTCTATTTGATAACATGGCACAGAAGACCCTTGTTTCATGGACTACAATGGTTTCGGGATATGCCAGATTTGGTCATCTGGATGTTGCTCGGGAACTTTTATATAAAGTTCCAGAGAAGAGTGTCGTGCCTTGGAATGCGATCATTAGTGGTTGTGTCCAAGCCAAGCATAGTAAGGAGGCATTGACTCTGTTCCATGAAATGCAAATTAATAATATAGAACCTGATAAAGTGACCATGGTCAACTGCCTGTCTGCATGCTCACAGCTTGGAGCACTCGATGTAGGAATATGGATTCACCATTATATTGAAAGACAAAACCTTTACATAGATGTTGCATTGGGAACTGCTCTAGTTGATTTGTATGCCAAGTGTGGAAATATGGATAGGGCTCTCCAGGTTTTTCAAGAGATTCCTCAAAGAAATTGTTTGACCTGGACAGCTATTATTTGTGGTTTAGCATTCAATGGGAATTCTCGCGATGCTATATCCTATTTCTCTAAAATGATTCATATTGGATTGGTGCCTGATGACATCACCTTTCTTGGTGTCTTATCAGCTTGTTGCCATGGAGGTTTAGTTGAAGAAGGCCGCAAATATTTTTCCCAAATGAGTTCTAAATTTAATATATCCCCTAAGCTTAAACACTACTCGTGCATGGTGGACCTTCTCGGAAGGGCTGGTCATTTGGAGGAAGGTGAAGAGCTCATCAGAAATATGCCTGTAGTGGCTGATGCTGCTGTGTGGGGTGCTTTATTCTTTGCCTGCCGTGTTCATGGCAATGTATCAATTGGAGAGAGGGCAGCTTTGAAGCTTCTTGAGATGGATCCTCAAGATGGTGGGATCTATGTTCTGCTTGCGAGCATGTACAGTGAGGCGAAAATGTGGAAGGAGGCAAGGAGTGCAAGGAAACTAATGAAGGAAAGAGGAGCAGATAAGACTCCTGGTTGCAGCTCAATTGAGATAAATGGCGTTATGCATGAGTTTGTGGTAAGGGATGCATCGCATCCACAGTCTGAATGGATTTACGAATGCTTGGTTTCTTTGACAAAGCAACTGGAGCTTCTTGGATTTGCATCCGCTGTTCCAGCTTTTGGAGAATATTTTTCTTCCTAA 1821 0.4146 MILTGLIDNGFAASRLVAFCALSEAQTLEYCTKLLYHIQEPNVFSWNVTIRGYIESGDMEGALLLYKRMLWCAGSKPDNHTYPLLLKACSCSSLSCLGHTILGHVLKFGFEFDIFVHNASISMLLSYGELEAAYDVFNKGCVRDLVTWNSMITGCVRRGVANEAIKLYREMEAEKVKPNEITMIGMVSSCSQLQDLNLGREFHYYIKEHGLELTIPLINALMDMYVKCGDLLAAQVLFDNMAQKTLVSWTTMVSGYARFGHLDVARELLYKVPEKSVVPWNAIISGCVQAKHSKEALTLFHEMQINNIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERQNLYIDVALGTALVDLYAKCGNMDRALQVFQEIPQRNCLTWTAIICGLAFNGNSRDAISYFSKMIHIGLVPDDITFLGVLSACCHGGLVEEGRKYFSQMSSKFNISPKLKHYSCMVDLLGRAGHLEEGEELIRNMPVVADAAVWGALFFACRVHGNVSIGERAALKLLEMDPQDGGIYVLLASMYSEAKMWKEARSARKLMKERGADKTPGCSSIEINGVMHEFVVRDASHPQSEWIYECLVSLTKQLELLGFASAVPAFGEYFSS* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1745 606 PANTHER OS10G0400250 PROTEIN 1 593 - -
Dod07g1745 606 Pfam PPR repeat family 379 425 IPR002885 -
Dod07g1745 606 Pfam PPR repeat family 144 190 IPR002885 -
Dod07g1745 606 Pfam PPR repeat family 275 322 IPR002885 -
Dod07g1745 606 Pfam PPR repeat family 41 89 IPR002885 -
Dod07g1745 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Dod07g1745 606 Pfam PPR repeat 451 475 IPR002885 -
Dod07g1745 606 Pfam PPR repeat 219 243 IPR002885 -
Dod07g1745 606 Pfam PPR repeat 351 378 IPR002885 -
Dod07g1745 606 Gene3D Tetratricopeptide repeat domain 245 343 IPR011990 GO:0005515
Dod07g1745 606 Gene3D Tetratricopeptide repeat domain 139 244 IPR011990 GO:0005515
Dod07g1745 606 Gene3D Tetratricopeptide repeat domain 9 138 IPR011990 GO:0005515
Dod07g1745 606 Gene3D Tetratricopeptide repeat domain 380 571 IPR011990 GO:0005515
Dod07g1745 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Dod07g1745 606 Pfam E+ motif 562 587 IPR046849 -
Dod07g1745 606 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 593 - -
Dod07g1745 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Dod07g1745 606 Pfam E motif 494 556 IPR046848 -
Dod07g1745 606 TIGRFAM PPR: pentatricopeptide repeat domain 247 279 IPR002885 -
Dod07g1745 606 TIGRFAM PPR: pentatricopeptide repeat domain 380 412 IPR002885 -
Dod07g1745 606 TIGRFAM PPR: pentatricopeptide repeat domain 280 311 IPR002885 -
Dod07g1745 606 TIGRFAM PPR: pentatricopeptide repeat domain 146 180 IPR002885 -
Dod07g1745 606 TIGRFAM PPR: pentatricopeptide repeat domain 45 78 IPR002885 -
Dod07g1745 606 TIGRFAM PPR: pentatricopeptide repeat domain 415 447 IPR002885 -
Dod07g1745 606 TIGRFAM PPR: pentatricopeptide repeat domain 351 378 IPR002885 -
Dod07g1745 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 42 77 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1745 Dod-Chr7 46104360 46106180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1745 26 593 Glycoside Hydrolase AT3G49170 29.340 6.14e-85 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1745 - - adu:110273047 1052.35