Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0247 ATGGCCCAGGTTACCAGAATCCACAATGGATTACAAACAACACAATTTTTTCATCAAATTCCCAATTCCCAAAAACCCCTTTTACCAAATTCAATTTCATTGAGGTCACACCTTTGTGGCTCCTCAAAATCTTTGAGCTTGAAGCATAAAAATGGAGGCTTTATGGTAAATTCCGATGTGGGTAGGGGAAATTCGAGTTTTATTAGGGTTTCTGCATCAGTTGCCGCTGCAGAGAAGCCATCAACGGCGCCGGAGATTGTGTTGGAACCCATCAGAGAAATCTCTGGTACAATTACTTTGCCTGGATCGAAGTCTCTGTCCAATCGGATTTTGCTTCTTGCTGCTCTCTCTGAGGGAACAACTGTTGTGGACAACTTGTTGAATAGCGAGGATGTTCATTACATGCTTGGTGCATTAAAGACACTTGGACTACGTGTGGAAGATGACAAAACAACCAAACAAGCAATCGTGGAAGGCTGTGGGGGTTTGTTTCCGACTGGTAAAGAATCCAAAGCTGAAGTTAATTTATTCCTCGGAAATGCTGGTACTGCAATGCGTCCTTTGACAGCGGCTGTAACTGCTGCAGGTGGAAATGCAAGCTACATACTTGATGGGGTGCCCCGAATGAGAGAGAGGCCTATTGGGGATTTGGTGGCTGGTCTCAAGCAACTTGGTGCAGATGTTGATTGTTCGCTTGGCACAAACTGCCCACCTGTTCGTGTAAACGGGAAGGGAGGACTACCCGGAGGAAAGGTGAAGCTGTCTGGATCAATTAGCAGTCAATACTTGACTGCTTTGCTTATGGCAGCTCCTTTGGCTCTTGGTGATGTGGAAATTGAGATTATTGATAAGCTCATTTCTGTTCCTTATGTTGAAATGACTTTGAAGTTAATGGAACGGTTTGGAGTCTCCGTGGAACACAGTAGTGACTGGGACAGGTTTTTGGTCCGTGGAGGTCAAAAGTACAAGTCTCCTGGAAATGCTTTTGTCGAAGGCGATGCTTCAAGTGCCAGTTACTTCCTAGCAGGTGCTGCAGTTACTGGTGGAACTATCACTGTTCAAGGCTGTGGGACTAGCAGTTTACAGGGAGACGTAAAATTTGCTGAAGTTCTTGAAAAGATGGGAGCTAAAGTTTCATGGACAGAGAACAGTGTAACTGTTACTGGGCCACCGCGAGATCCTTCAGGTCGAAAAGTTTTACAAGGGGTTGATGTCAATATGAACAAGATGCCAGATGTTGCCATGACACTTGCAGTAGTTGCACTATTTGCTAATGGTCCCACTGCTATAAGAGATGTGGCTAGTTGGAGAGTTAAAGAGACAGAGAGAATGATAGCAATCTGCACTGAACTGACCAAGCTAGGAGCAACAGTTGAAGAGGGTCCTGATTACTGTGTGATAACTCCACCTGAGAAATTGAAAATCACATCAATAGATACATATGATGATCATAGAATGGCAATGGCATTTTCTCTTGCGGCTTGCGCCGATGTTCCGGTAACCATCAATGATCCTGGTTGCACCAGGAAAACATTCCCTGACTACTTTCAAGTCCTTGAGAAGTTTACCAAGCATTAA 1578 0.4455 MAQVTRIHNGLQTTQFFHQIPNSQKPLLPNSISLRSHLCGSSKSLSLKHKNGGFMVNSDVGRGNSSFIRVSASVAAAEKPSTAPEIVLEPIREISGTITLPGSKSLSNRILLLAALSEGTTVVDNLLNSEDVHYMLGALKTLGLRVEDDKTTKQAIVEGCGGLFPTGKESKAEVNLFLGNAGTAMRPLTAAVTAAGGNASYILDGVPRMRERPIGDLVAGLKQLGADVDCSLGTNCPPVRVNGKGGLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIIDKLISVPYVEMTLKLMERFGVSVEHSSDWDRFLVRGGQKYKSPGNAFVEGDASSASYFLAGAAVTGGTITVQGCGTSSLQGDVKFAEVLEKMGAKVSWTENSVTVTGPPRDPSGRKVLQGVDVNMNKMPDVAMTLAVVALFANGPTAIRDVASWRVKETERMIAICTELTKLGATVEEGPDYCVITPPEKLKITSIDTYDDHRMAMAFSLAACADVPVTINDPGCTRKTFPDYFQVLEKFTKH 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0247 525 PANTHER 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE, CHLOROPLASTIC 1 525 - -
Lal19g0247 525 ProSitePatterns EPSP synthase signature 2. 437 455 IPR023193 -
Lal19g0247 525 SUPERFAMILY EPT/RTPC-like 86 521 IPR013792 GO:0003824
Lal19g0247 525 Gene3D Enolpyruvate transferase domain 102 314 IPR036968 GO:0016765
Lal19g0247 525 Pfam EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 89 519 IPR001986 GO:0016765
Lal19g0247 525 TIGRFAM aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 96 524 IPR006264 GO:0003866|GO:0009073
Lal19g0247 525 Gene3D Enolpyruvate transferase domain 320 523 IPR036968 GO:0016765
Lal19g0247 525 ProSitePatterns EPSP synthase signature 1. 176 190 IPR023193 -
Lal19g0247 525 PANTHER AROM/DEHYDROQUINATE SYNTHASE 1 525 - -
Lal19g0247 525 Hamap 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 92 525 IPR006264 GO:0003866|GO:0009073
Lal19g0247 525 CDD EPSP_synthase 94 522 IPR006264 GO:0003866|GO:0009073
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0247 Lal-Chr19 2402097 2408570 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0247 K00800 - gmx:100789268 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0247 19 2402097 2408570 Lal19g0247 19 2402097 2408570 ECH
Lal14g0872 14 11133824 11139535 Lal19g0247 19 2402097 2408570 LSH