Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0749 ATGCTTATTTCGTATGTCACCAAACTCAGATCTCGTCCTTTGATTTCATCCCCGCTTTTAGGCCTCTTTATTTCGTATTTGCATACTAGTACCTTGTTTCGCTATGCGAAACCCATCAATTGGAACATTACTCACAGTTTTGTTCGAAATAATCCACTCCTTTCTCTCTTAGAAAGATGCAAATCCTTGCACCAATTAAAGCAAATCCAGGGGCAAATGGTTTTAATAGGCTTGGTAGATGATAGCTTTGCCGCAAGTCGCCTGATTGCCTTCTGTGCTCTCTCCGAATCGCGAAGTCTTGAATACTGCATGAAAGTCTTGTATCATACACAAGAACCGAATGTCTTCTCGTGGAATGTGACAATGCGGGGGCATGTGGAAAGCGGGGACATAGAAGGAGCTATTTTGTTGTACAAGAGAATGTTGCGATGTGGTAGTTTGAAGCCGGATAGTCACACTTACCCTTTATTGCTTAAAGCTTGTTCCTGTCCATCTCTGAATTGTGTAGGTCTTACTATACTTGGACATGTGTTGAAATTTGGTTTTCAATTTTATTTATTTGTGCACAACGCGTCGATCAGTATGCTTCTCTCGTATGGACACTTAGAGGCAGCATATGATATGTTTAATAAAGGTTGTGTGAGAGACCTGGTAACCTGGAATTCCATCATTACTGGGTTTGTTAGAAGAGGATTAGTAAATGAGGCTGTAAAACTCTATCGGGAAATGGAAGCAGAGAAAGTGAAACCAGATGAGATTACAATGATTGGAGTGGTTTCTTCTTGTTCTCAGCTGCAGGATTTGAATCTTGGAAGAGAATTTCATCGTTACATTGAAGAACATGGGATTGAGTTAACAGTTCCACTTACTAATGCACTTATGGACATGTATGTGAAGTGCGGAGACCTATTGGCTGCACGATTTCTATTTGATAACATGGCACAAAAGAGCCTTGTTTCATGGACTACAATGGTTTTAGGATATTCAAGATTCGGTTTTCTGGATGTTGCTCGTGAGCTTTTATTTAAAATTCCAGAGAAGAGTGTTGTTCCTTGGAATGCAATAATAAGTGGTTGTGTCCATGCCAAGCAAAGTAAAGAGGCATTGAATCTATTTCATGAAATGCAAATTAATAGCATAGAACCTGATAAAGTAACCATGGTTAATTGCCTGTGTGCATGCTCACAACTTGGAGCACTGGATGTAGGAATATGGATTCACCATTATATTGAAAAACACAATCTTTCTTTAGATGTTGCCATGGGAACTGCACTAGTTGACATGTATGCCAAGTGTGGAAATATTGCAAAGGCCGTTCAGGTTTTCGAAGAGATTCCTCAAAGAAATTGCTTGACCTGGACATCCATTATTTGTGGTTTAGCACTTCATGGGAATGCCCGTGATGCTTTATCCTATTTCTCGAAAATGATTAATATTGGATTGATACCTGACGAGATCACCTTTCTTGGTGTCTTGTCAGCTTGTTGTCATGGAGGATTAGTTGAAGAAGGCCGCAAATATTTTTCCCAAATGAGCTCCAAGTTCAATATATCTCCTAAGCTTAAACACTACTCGTGCATGGTGGACCTCTTAGGAAGGGCCGGTCATTTGGAGGAAGCAGAAGATCTTATTAAAAATATACCCATGGCGCCTGATGCTGCTGTGTTGGGTGCTTTATTCTTTGCTTGTCGTGTTCATGGAAATGTTCTAATTGGAGAGAGGACAGCTTTCAAGCTTCTTGAGGTGGATCCTCAAGATAGTGGAAACTATGTTCTGCTGGCTAGCATGTACAGTGAGGCTAAAATGTGGAAGGAGGCAAGGAGTGCAAGGAAAATGATGGAGGATAGAGGAGTAGAAAAGACTCCTGGTTGCAGCTCAATTGAGATCAATGGCATAGTGCATGAGTTTATCGTGAGAGATGCATCACATCCACTATCTGAACGGATTTACGAGTGTCTAGTTTCATTGGCAAAACAACTAGAGCTTCTAGGATTTACATCTAATGTTCCTGCTTATGGAGATGATCTTTTATCCTAA 2037 0.4045 MLISYVTKLRSRPLISSPLLGLFISYLHTSTLFRYAKPINWNITHSFVRNNPLLSLLERCKSLHQLKQIQGQMVLIGLVDDSFAASRLIAFCALSESRSLEYCMKVLYHTQEPNVFSWNVTMRGHVESGDIEGAILLYKRMLRCGSLKPDSHTYPLLLKACSCPSLNCVGLTILGHVLKFGFQFYLFVHNASISMLLSYGHLEAAYDMFNKGCVRDLVTWNSIITGFVRRGLVNEAVKLYREMEAEKVKPDEITMIGVVSSCSQLQDLNLGREFHRYIEEHGIELTVPLTNALMDMYVKCGDLLAARFLFDNMAQKSLVSWTTMVLGYSRFGFLDVARELLFKIPEKSVVPWNAIISGCVHAKQSKEALNLFHEMQINSIEPDKVTMVNCLCACSQLGALDVGIWIHHYIEKHNLSLDVAMGTALVDMYAKCGNIAKAVQVFEEIPQRNCLTWTSIICGLALHGNARDALSYFSKMINIGLIPDEITFLGVLSACCHGGLVEEGRKYFSQMSSKFNISPKLKHYSCMVDLLGRAGHLEEAEDLIKNIPMAPDAAVLGALFFACRVHGNVLIGERTAFKLLEVDPQDSGNYVLLASMYSEAKMWKEARSARKMMEDRGVEKTPGCSSIEINGIVHEFIVRDASHPLSERIYECLVSLAKQLELLGFTSNVPAYGDDLLS* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0749 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Lan1g0749 678 TIGRFAM PPR: pentatricopeptide repeat domain 352 383 IPR002885 -
Lan1g0749 678 TIGRFAM PPR: pentatricopeptide repeat domain 117 150 IPR002885 -
Lan1g0749 678 TIGRFAM PPR: pentatricopeptide repeat domain 452 484 IPR002885 -
Lan1g0749 678 TIGRFAM PPR: pentatricopeptide repeat domain 218 252 IPR002885 -
Lan1g0749 678 TIGRFAM PPR: pentatricopeptide repeat domain 487 519 IPR002885 -
Lan1g0749 678 TIGRFAM PPR: pentatricopeptide repeat domain 423 450 IPR002885 -
Lan1g0749 678 Gene3D Tetratricopeptide repeat domain 48 163 IPR011990 GO:0005515
Lan1g0749 678 Gene3D Tetratricopeptide repeat domain 356 485 IPR011990 GO:0005515
Lan1g0749 678 PANTHER OS10G0400250 PROTEIN 38 665 - -
Lan1g0749 678 Gene3D Tetratricopeptide repeat domain 171 268 IPR011990 GO:0005515
Lan1g0749 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Lan1g0749 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Lan1g0749 678 Gene3D Tetratricopeptide repeat domain 486 649 IPR011990 GO:0005515
Lan1g0749 678 Gene3D Tetratricopeptide repeat domain 269 352 IPR011990 GO:0005515
Lan1g0749 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Lan1g0749 678 Pfam E motif 566 628 IPR046848 -
Lan1g0749 678 Pfam PPR repeat family 216 261 IPR002885 -
Lan1g0749 678 Pfam PPR repeat family 113 161 IPR002885 -
Lan1g0749 678 Pfam PPR repeat family 347 393 IPR002885 -
Lan1g0749 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 484 514 IPR002885 -
Lan1g0749 678 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 38 665 - -
Lan1g0749 678 Pfam PPR repeat 487 513 IPR002885 -
Lan1g0749 678 Pfam PPR repeat 523 545 IPR002885 -
Lan1g0749 678 Pfam PPR repeat 291 316 IPR002885 -
Lan1g0749 678 Pfam PPR repeat 452 480 IPR002885 -
Lan1g0749 678 Pfam PPR repeat 423 450 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0749 Lan-Chr1 17516526 17520618 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0749 99 669 Glycoside Hydrolase AT3G49170 29.655 3.07e-82 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0749 - - var:108319674 1073.15