Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g0972 ATGGTAATTTTGTTTGTCACCAAATTCAGATATAGATATAGTTTTAGTTCTACTTTGATTAATCCAACATGTCCAAATTTAGGTTTTTTAATTTCATTTTTTCATACTAGTTCACTGTCACCAATTGTCAAACCCATAAATTGGAACACTACCCATAGTTTTGTTAGGAAAAACCCTTTGCTTGCTATACTGGAAAGATGCGAGTCACTTGTCCAGTTGAAGCAAATTCAGGCTCAAATGGTATTGACTGGTTTGATTGATGATGGTTTTGCTGCGAGTCGTCTTGTAGCGTTTTGTGCTTTATCTGAGTCGAAAGCACTTGATTATTGTACTAAGATATTGTATCGAATTAAAGAGCCCAATGTGTTTTCTTGGAATGCGACAATTAGGGGATATGTGGAGAGTGGAGATGTAGAAGGAGGTTTTATGCTGTACAAGAGGATGTTGCAAGGGGGTGTTTTGAAGCCGGATAATCATACTTACCCATTGTTGCTTAAAGCTTGTTCTTGTCGATCTTTAAGTTGTGTTGGTCTTGGTATACTTGGGCATGTGTTGAAGTTTGGGTTTGAATTGGATTTATTTGTGCATAATGCGTCGATCACTATGCTACTCGCGTGTGGGGAGTTGAGTGTTGCATGTGATTTGTTTAATAAAAGTCGTGTGAGAGACTTGGTAACATGGAATTCGATGATTACTGGATGTGTTAAAAGGGGACTGGCAAATGATGCTATAAAAATCTATCGGGAAATGGAGGAAGAGAGAGTGAAACCTAATGAGATTACAATGATTGGGATGATTTCTTCTTGTTCTCAATTGCAGGATTTGAATCTTGGCAAAGAATTTCATCGTTACATTGAAGAACATGGCCTTGAGTTGACAATTCCACTCACTAATGCACTTATGGACATGTACGTGAAGTGTGGGGAATTGTTGCCTGCAAGAGTTCTATTTGATAACATGGCACAAAAGACCCTTGTTTCATGGACTACAATGGTTTTGGGATATGCTAGATTCGGTTTCCTGGATGTTGCTCGGGAGATTTTATATAAAATTCCAGAAAAGAGTGTTGTGCCGTGGAATGCCATCATCAGTGGCTGTGTCCAGGCCAAGCATAGTAAAGAGGCATTGGCTTTATTCCATGAAATGCAAATTAGTAAAGTAGAACCCGATAAAGTGACCATGGTTAACTGCCTGTCTGCATGCTCACAACTAGGAGCACTTGATGTTGGAATATGGATTCACCGTTATATTGAAAGGCACAATATTTCTCTTGATGTTGCCTTAGGAACTGCACTAGTCGACATGTATGCCAAGTGCGGAAATATTTCAAGGGCACTCCAGGTTTTCGAAGAGATTCCTCAAAGAAACTGTTTGACCTGGACAGCCATCATTTGTGGTTTAGCACTTCATGGGAATGCTCAAGATGCTCTATCATATTTCTCAAAAATGATTCATATTGGAATAATGCCTGACGAGATCACCTTTCTTGGTGTGTTATCAGCTTGTTGTCATGGAGGTTTAGTTGAAGAAGGCCGCAAATATTTTTTTGAAATGAGATCTAAATTCAATCTATCTCCCAAGCTTAAACACTACTCATGCATGGTGGACCTCTTCGGAAGAGCTGGTCATTTGGAGGAGGCAGAAGAACTCGTTAAAAGTATGCCAATGCCGGCAGATGCTGCTGTGTTGGGTGCTTTGTTCTTTGCTTGCCGTGTGCATGGAAATGTTCTAATTGGAGAGAGGACGGCTTTTAAGCTTCTTGAGATTGATCCTCAAGATAGTGGAAACTATGTTCTACTCGCTAGCATGTATAGTGAAGCAAAAATGTGGAAGGAGGCAAGGAGTGCAAGGATAATAATGAAGGAGAGAGGACTAGAGAAGACTCCTGGTTGCAGCTCGGTTGAGATCAATGGCATTGTGCATGAATTCATGGTGAGGGATGCATCACATCCACAGTCTGAATGGATTTATGAATGCCTGGTTTCTCTGACAAAACAACTGGAGCTTCTCGAGTTGACATGATATTTTCCCTGCTCATTCCCAACTTTATCTTGGTTAGGTTGCTACATGATTTCCATAGTTTTTTCACCTTTTCATCCTCACGGTGGTCAATTATTCTACCCTACTTATGGCTTGGTTCAGACTTGCAATTGTGTTTTAAAGCTTTACATGGAGTTGGGAGGAAGCTGACATTATGAACGTTGTCTTGACATTGACCAGAGCAATCCAGTATTGGAATTGATAAAGTGTAGTTATTCGCATATTACAAACAAATTAAACAACGGAGAAAATGGTAAGACAGCAAAAGCTTCATCCAAGGAGTTACCCAAAACAGCCCAAATCCGCCTTGTGAGTTCGCATGACGAGGTTTACGAACCATGTGATGACTCTTTTGCACTGGTTGACGCTCTTCTAGCTGACCGCACTAACCTACTGGAACATCATCCAGCATTTTGTATGGAAATAGGGTGTGGCAGTGGATATGTTATCACTTCTCTGGCTCTTATTCTTGGGGCAGAAGGTAATGGTGTAAATTACATTGCAACTGATATCAACCCGCATGCAGTGAAGGTGACCCACGAGACAATGGAAGCACATGGAGTTAATGCGGAGTTGATAATGACCGATATTGCATCAGGACTTGAGAAGCGACTAGCAGGGTTGGTTGACGTTATGGTTGTGAACCCTCCTTATGTGCCTACACCTGAAGACGAAGTTGGGTCTGAAGGAATTACCGCTTCTTGGGCTGGTGGCGAGAATGGAAGAAGTGTAATTGATAGAATTTTGCCTGTGGCAGACACTCTCTTGTCGGAAAAAGGATGGTTGTATATGGTCACTCTCCAAGCAAATAATCCTTCTGAGATTTGCCATGAAATGAGAAAGAAAGGATATGCTTCTAAGATTGTTGTTCAAAGATCAACAGAGGAAGAAAGTCTACTTATCATCAAATTCTGGAGGGATTTAGATATTGAAATAAATGGCCAATCTACTTCTGGATTCATGGGATCTTTGCTTTCACAAATTCCAATACTTTCATACATGAGTGGCAACAATAGTGACAATAAGTGTTGA 3072 0.4056 MVILFVTKFRYRYSFSSTLINPTCPNLGFLISFFHTSSLSPIVKPINWNTTHSFVRKNPLLAILERCESLVQLKQIQAQMVLTGLIDDGFAASRLVAFCALSESKALDYCTKILYRIKEPNVFSWNATIRGYVESGDVEGGFMLYKRMLQGGVLKPDNHTYPLLLKACSCRSLSCVGLGILGHVLKFGFELDLFVHNASITMLLACGELSVACDLFNKSRVRDLVTWNSMITGCVKRGLANDAIKIYREMEEERVKPNEITMIGMISSCSQLQDLNLGKEFHRYIEEHGLELTIPLTNALMDMYVKCGELLPARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKHSKEALALFHEMQISKVEPDKVTMVNCLSACSQLGALDVGIWIHRYIERHNISLDVALGTALVDMYAKCGNISRALQVFEEIPQRNCLTWTAIICGLALHGNAQDALSYFSKMIHIGIMPDEITFLGVLSACCHGGLVEEGRKYFFEMRSKFNLSPKLKHYSCMVDLFGRAGHLEEAEELVKSMPMPADAAVLGALFFACRVHGNVLIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARIIMKERGLEKTPGCSSVEINGIVHEFMVRDASHPQSEWIYECLVSLTKQLELLELT*YFPCSFPTLSWLGCYMISIVFSPFHPHGGQLFYPTYGLVQTCNCVLKLYMELGGS*HYERCLDIDQSNPVLELIKCSYSHITNKLNNGENGKTAKASSKELPKTAQIRLVSSHDEVYEPCDDSFALVDALLADRTNLLEHHPAFCMEIGCGSGYVITSLALILGAEGNGVNYIATDINPHAVKVTHETMEAHGVNAELIMTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGSEGITASWAGGENGRSVIDRILPVADTLLSEKGWLYMVTLQANNPSEICHEMRKKGYASKIVVQRSTEEESLLIIKFWRDLDIEINGQSTSGFMGSLLSQIPILSYMSGNNSDNKC* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g0972 1021 Gene3D Tetratricopeptide repeat domain 50 174 IPR011990 GO:0005515
Tpr4g0972 1021 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Tpr4g0972 1021 Gene3D Vaccinia Virus protein VP39 786 990 IPR029063 -
Tpr4g0972 1021 Pfam E+ motif 640 666 IPR046849 -
Tpr4g0972 1021 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Tpr4g0972 1021 Gene3D Tetratricopeptide repeat domain 360 491 IPR011990 GO:0005515
Tpr4g0972 1021 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 521 IPR002885 -
Tpr4g0972 1021 TIGRFAM PPR: pentatricopeptide repeat domain 123 154 IPR002885 -
Tpr4g0972 1021 TIGRFAM PPR: pentatricopeptide repeat domain 359 390 IPR002885 -
Tpr4g0972 1021 TIGRFAM PPR: pentatricopeptide repeat domain 494 523 IPR002885 -
Tpr4g0972 1021 TIGRFAM PPR: pentatricopeptide repeat domain 459 491 IPR002885 -
Tpr4g0972 1021 TIGRFAM PPR: pentatricopeptide repeat domain 531 554 IPR002885 -
Tpr4g0972 1021 TIGRFAM PPR: pentatricopeptide repeat domain 225 259 IPR002885 -
Tpr4g0972 1021 ProSitePatterns N-6 Adenine-specific DNA methylases signature. 890 896 IPR002052 GO:0003676|GO:0008168|GO:0032259
Tpr4g0972 1021 Pfam E motif 573 635 IPR046848 -
Tpr4g0972 1021 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
Tpr4g0972 1021 CDD AdoMet_MTases 819 943 - -
Tpr4g0972 1021 TIGRFAM hemK_rel_arch: putative methylase 788 983 IPR004557 GO:0008168
Tpr4g0972 1021 Pfam PPR repeat 298 322 IPR002885 -
Tpr4g0972 1021 Pfam PPR repeat 459 488 IPR002885 -
Tpr4g0972 1021 Pfam PPR repeat 530 554 IPR002885 -
Tpr4g0972 1021 Pfam PPR repeat 430 457 IPR002885 -
Tpr4g0972 1021 Pfam PPR repeat 494 521 IPR002885 -
Tpr4g0972 1021 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 786 970 IPR029063 -
Tpr4g0972 1021 Pfam Methyltransferase small domain 817 898 IPR007848 GO:0008168
Tpr4g0972 1021 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 44 673 - -
Tpr4g0972 1021 Gene3D Tetratricopeptide repeat domain 175 325 IPR011990 GO:0005515
Tpr4g0972 1021 Gene3D Tetratricopeptide repeat domain 492 655 IPR011990 GO:0005515
Tpr4g0972 1021 PANTHER OS10G0400250 PROTEIN 44 673 - -
Tpr4g0972 1021 Pfam PPR repeat family 120 168 IPR002885 -
Tpr4g0972 1021 Pfam PPR repeat family 354 401 IPR002885 -
Tpr4g0972 1021 Pfam PPR repeat family 223 269 IPR002885 -
Tpr4g0972 1021 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g0972 Tpr-Chr4 9335687 9340067 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g0972 78 668 Glycoside Hydrolase AT3G49170 29.118 1.53e-80 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g0972 - K19589 mtr:MTR_4g024860 1727.99