Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1396 ATGCCCATTCTGTTTGTCGGCAAATTCAGATATCGATATAGATATAGATATAGATATAGCTACCCTTTGATCCCGACAGCCCCACCTTTTATCCCTTTTCTCTCGTTGTTACATACTCGGTCGTTAGCTCCCCTTGTCAAACCTATCAATTGGAACACCACCCACAGTTTTGTTTGGAAAAATCCGCTTCTTTCGATCTTGGAAAGATGTAAGTCATTGGTGCAGTTGAAGCAAATCCAGGCTCGGATGACCGTGACGGGCTTGGTTGATGATGGTTTTGCTGCGAGTCGGCTCGTTGCCTTTTGTGCTCTCTCTGAATCGCGGGCCCTTGAGTATTGCAGTAAAATCTTGTTTCATGCACGAGAACCCAATGTCTTTTCTTGGAACGTGACGGTAAGGGGATATGTGGAAAGTGGGAGCTTAGAAGGAGCTCTTTTGATGTACAGGAGAATGTTGCAGGGTGGTGTTTTGAAGCCAGATAATCATACTTACCCTTTACTGATTAAAGCTTGTTCTTGCCCATCTTTAAATTGGGTCGGTCTTACTATACTTGGGCATGTGTTGAAGTTTGGTTTTGAATCAGATATATTTGTGCACAATGCTTCAATCACTATGCTACTCTCATACGGAGAGTTGGAGGCAGCATATGATGTGTTCAGTAAAAGTTGTGTGAGAGACCTTGTAACCTGGAATTCCATGATTACTGGGTGTGTTAGAAGAGGACTAGCAAATGAGGCTATAAAACTCTATCGAGAAATGGAGGCAGAGAAAGTGAAGCCAAATGAGATTACAATGATTGGGGTCGTTTCTTCTTGTTCTCAGTTACAGGATTTGAATCTTGGCAGAGAATTTCATCATTATATCAAGAGACAAGGGCTTGAGTTCACAATTCCACTCAATAATGCGCTTATGGATATGTATGTGAAGTGTGGGGACCTGTTAGCTGCACGAGTTTTATTTGATAACATGGCACAGAAGACCATTGTTTCATGGACTACAATGGTTTTGGGATATGCTAGATTAGGTTTTCTGGATATTGCTCGGGAGCTTTTATTTAAAATTCCAGAGAAAAGTGTTGTGCCTTGGAATGCAATGATCAGTGGCTGTGTCCAAGCTAAGCATAGTAAGGAGGCATTGGCTCTATTCCATGAAATGCAAATTAGAAAAATAGAACCTGATAAAGTGACCTTGGTTAACTGTCTTTCTGCGTGCTCCCAACTAGGAGGACTTGATGTCGGAATATGGATTCACCATTATATTGGAAAACACAGTATTTCTCTAGATGTTGTTGTAGGAACTGCACTAGTTGATATGTATGCCAAGTGCGGAAATATTGCAAGGGCACTCCAGGTTTTCCAAGAGATTCCTCAAAGAAACTGTTTGACCTGGACAGCCATCATTTGTGGTTTAGCACTTCATGGGAATGCTCATGACGCTATTTCCTATTTCTCGAAAATGATTCATAACGGATTAATGCCTGATGAGATCACCTTTCTTGGTGTCTTACAAGCATGTTGTCATGGAGGTTTAGTTGCAGAAGGCCGTAAATATTTTTCTGAAATGAGCTCTAAATTCAATATATCTCCAAAGGTTAAACACTACTCATGCATGGTGGACCTTTTAGGAAGGGCTGGTCATTTGGAGGAAGCAGAACAGCTTATTAAAAGTATGCCCATGGCGGCTGATGCTGCTGTGTGGGGTGCTTTATTCTTTGCTTGTCGAGTACATGGCAATGTTCTAATTGGAGAGAGGACAGCTTTGAAGCTTCTTGAGATTGATCCTCATGATAGTGGAATTTATGTTCTGCTTGCTAGCATGTACCGTGAGGCAAAAATGTGGAAGGAGGCAAGGAGTGCAAGGAAAATAATGGAGGAGAGAGGAGTGGAAAAAACGCCTGGTTGCAGCTCAGTTGAGATCAATGGCATTGTTTATGAGTTTGTGGCGAGGGATGCATCACACCCTCTGTCTGAATGGATTTATGAATGCCTGGTTTCATTGACAAAACAACTGTAG 2013 0.4193 MPILFVGKFRYRYRYRYRYSYPLIPTAPPFIPFLSLLHTRSLAPLVKPINWNTTHSFVWKNPLLSILERCKSLVQLKQIQARMTVTGLVDDGFAASRLVAFCALSESRALEYCSKILFHAREPNVFSWNVTVRGYVESGSLEGALLMYRRMLQGGVLKPDNHTYPLLIKACSCPSLNWVGLTILGHVLKFGFESDIFVHNASITMLLSYGELEAAYDVFSKSCVRDLVTWNSMITGCVRRGLANEAIKLYREMEAEKVKPNEITMIGVVSSCSQLQDLNLGREFHHYIKRQGLEFTIPLNNALMDMYVKCGDLLAARVLFDNMAQKTIVSWTTMVLGYARLGFLDIARELLFKIPEKSVVPWNAMISGCVQAKHSKEALALFHEMQIRKIEPDKVTLVNCLSACSQLGGLDVGIWIHHYIGKHSISLDVVVGTALVDMYAKCGNIARALQVFQEIPQRNCLTWTAIICGLALHGNAHDAISYFSKMIHNGLMPDEITFLGVLQACCHGGLVAEGRKYFSEMSSKFNISPKVKHYSCMVDLLGRAGHLEEAEQLIKSMPMAADAAVWGALFFACRVHGNVLIGERTALKLLEIDPHDSGIYVLLASMYREAKMWKEARSARKIMEERGVEKTPGCSSVEINGIVYEFVARDASHPLSEWIYECLVSLTKQL* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1396 670 PANTHER OS10G0400250 PROTEIN 47 669 - -
Lja3g1396 670 TIGRFAM PPR: pentatricopeptide repeat domain 462 495 IPR002885 -
Lja3g1396 670 TIGRFAM PPR: pentatricopeptide repeat domain 127 157 IPR002885 -
Lja3g1396 670 TIGRFAM PPR: pentatricopeptide repeat domain 534 557 IPR002885 -
Lja3g1396 670 TIGRFAM PPR: pentatricopeptide repeat domain 362 393 IPR002885 -
Lja3g1396 670 TIGRFAM PPR: pentatricopeptide repeat domain 228 262 IPR002885 -
Lja3g1396 670 Pfam PPR repeat 301 326 IPR002885 -
Lja3g1396 670 Pfam PPR repeat 533 558 IPR002885 -
Lja3g1396 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
Lja3g1396 670 Pfam E+ motif 643 669 IPR046849 -
Lja3g1396 670 Gene3D Tetratricopeptide repeat domain 362 505 IPR011990 GO:0005515
Lja3g1396 670 Gene3D Tetratricopeptide repeat domain 506 649 IPR011990 GO:0005515
Lja3g1396 670 Pfam PPR repeat family 226 271 IPR002885 -
Lja3g1396 670 Pfam PPR repeat family 459 507 IPR002885 -
Lja3g1396 670 Pfam PPR repeat family 123 171 IPR002885 -
Lja3g1396 670 Pfam PPR repeat family 357 404 IPR002885 -
Lja3g1396 670 Gene3D Tetratricopeptide repeat domain 54 175 IPR011990 GO:0005515
Lja3g1396 670 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 47 669 - -
Lja3g1396 670 Gene3D Tetratricopeptide repeat domain 177 326 IPR011990 GO:0005515
Lja3g1396 670 Pfam E motif 576 638 IPR046848 -
Lja3g1396 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Lja3g1396 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Lja3g1396 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1396 Lja-Chr3 14764229 14766241 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1396 81 670 Glycoside Hydrolase AT3G49170 28.930 5.77e-85 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1396 - - var:108319674 1099.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1396 3 14764229 14766241 Lja3g1396 3 14764229 14766241 ECH