Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01644 ATGGGGTCTCCTTCAACATTTTCGCGTCTTAATCTCTTCCCAAAGCCACGTTCGCTTTTCTCTGCACTCACCACACTCCGCAGAAACCAACTTCCATTCAATTCGTCGTTTACCGCACCTTCCCGCGCAACCTCCTCCGCTTCAAAACGCGATGGCGATGTCGTCGTTTTGGGCATCGAAACCAGCTGCGACGACACCGCTGCGGCTGTCGTGAGAAGCGACGGTGAGATTCTTAGCCAAGTGGTCTCTTCTCAGTGCATTTTCAATGTTGCATCAGCTGGGTTATCTGGTGGGTGGATGGGAGTGTTCTTTGAATGTGCTAATGCTATACATCTGCTTGCAAAATATGGAGGCGTTGCTCCAAAAATGGCAGAAGAAGCTCATTCACAAGTTATAGATCAGGTTGTGCAAGAAGCCCTTGATAAAGCTTATATGACCGAAAAAGATCTCACTGCTGTTGCTGTTACTATTGGTCCTGGCTTGAGTCTCTGCCTTCGCGTGGGAGTTCAGAAAGCCCGGAGAATTGCTGGGGGATTTAATTTGCCTATTATTGGCATACATCACATGGAGGCTCATGCTCTGGTGGCCAGGTTAATTGAAAAAGATTTGCGGTTTCCATTCATGGCCCTACTTATTTCAGGAGGGCACAATTTACTCATTCTTGCACGTGATCTTGGACAATACATACAACTTGGAACTACAATAGATGATGCTATCGGTGAGGCATATGACAAGACAGCAAAATGGCTTGGACTAGATTTGAGAAGGAGTGGGGGTCCTGCTATTGAGAAGCTTGCTATGGAGGGAAATGCTGAATCAATCAAATTTTCTATTCCAATGAAGCAGCACAAAGATTGCAATTTCTCCTATGCTGGTCTAAAAACCCAAGTTCGACTGGCAATTGAGTCCAAAAAGATTGATGCCAAAATTCCAATCTCTTTGACAAGTAAGGAAGATAGACTGTCACGGGCTGATATTGCTGCTTCTTTTCAGCGAATTGCTGTGTTACATCTTGAAGAAAGGTGTGAACGAGCGATACAGTGGGCATTGAAGATGGAGCCTTCTATAAGACACTTGGTTGTCTCTGGTGGTGTTGCATCAAATCAATTTGTCCGAGCCCGGCTTGATATGGTTGTAAAGAAGAACGGCCTGCAACTTTTGTGCCCTCCTCCTCAGCTTTGCACTGATAACGGTGTAATGATTGCTTGGACTGGTATTGAGCATTTCCGCATGGGAAGATATGACCCTCCTCCACCTGCAGAAGAACCCGAAGACTTTGTGTATGATATACGCCCAAGGTGGCCGTTGGGGGAAGAATTTGCTGGAGGAAAAAGTGAAGCACGTTCCTTAAGAACAGCCCGTATTCATCCATCTCTTACATCTATAATTCAAGCATCATTGCAACAGTAA 1410 0.456 MGSPSTFSRLNLFPKPRSLFSALTTLRRNQLPFNSSFTAPSRATSSASKRDGDVVVLGIETSCDDTAAAVVRSDGEILSQVVSSQCIFNVASAGLSGGWMGVFFECANAIHLLAKYGGVAPKMAEEAHSQVIDQVVQEALDKAYMTEKDLTAVAVTIGPGLSLCLRVGVQKARRIAGGFNLPIIGIHHMEAHALVARLIEKDLRFPFMALLISGGHNLLILARDLGQYIQLGTTIDDAIGEAYDKTAKWLGLDLRRSGGPAIEKLAMEGNAESIKFSIPMKQHKDCNFSYAGLKTQVRLAIESKKIDAKIPISLTSKEDRLSRADIAASFQRIAVLHLEERCERAIQWALKMEPSIRHLVVSGGVASNQFVRARLDMVVKKNGLQLLCPPPQLCTDNGVMIAWTGIEHFRMGRYDPPPPAEEPEDFVYDIRPRWPLGEEFAGGKSEARSLRTARIHPSLTSIIQASLQQ 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01644 469 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 208 220 IPR017861 -
Spst4g01644 469 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 359 368 IPR017861 -
Spst4g01644 469 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 231 252 IPR017861 -
Spst4g01644 469 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 57 70 IPR017861 -
Spst4g01644 469 SUPERFAMILY Actin-like ATPase domain 56 404 IPR043129 -
Spst4g01644 469 Gene3D - 206 389 - -
Spst4g01644 469 Pfam tRNA N6-adenosine threonylcarbamoyltransferase 108 403 IPR000905 -
Spst4g01644 469 FunFam Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial 206 389 - -
Spst4g01644 469 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE 49 441 IPR000905 -
Spst4g01644 469 NCBIfam tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD 110 402 IPR017861 -
Spst4g01644 469 Hamap tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 54 436 IPR022450 GO:0002949
Spst4g01644 469 Gene3D - 56 411 - -
Spst4g01644 469 NCBIfam tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD 108 409 IPR022450 GO:0002949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01644 K01409 - gmx:100784367 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01644 4 56086210 56100755 Spst4g01644 4 56086210 56100755 ECH