Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01257 ATGTCTCAGCTGAAGCAAATGTCTCACTCCGACAGTGCCCCATCAACGCCGGGAAAGTTCAAGATGGAAAAAGCTTCCTACTTTAACCGTGTACGGTGGTACGCTTCGCCGGCGAAACTCGCCCTTTGGTCCTTCATCCTCTCGGCGGCGATCTTGATCTTCTTTTTCCGATCACCGGCGACTTCTCCTCTTCCGGGGGACCCATCTCGCCGTTCTCTCCGAACTTCCAACTGGGGAGGCCCGGTTTGGGAGAAACGGGTCAGGTCCTCTGCCCGGGTCCGTTCCCGAAATGGGTTCTCTGTTCTGGTCACAGGAGCCGCCGGTTTCGTTGGGACCCACGTCTCCGCCGCCTTGAAACGCCGCGGAGATGGGGTGCTCGGGATTGATAATTTCAATGACTATTATGACCCTTCTTTGAAGCGTGCAAGGCAAGCTTTGTTGGAACGAACTGGGGTTTTTATAGTGGAAGGTGATATCAATGATGCTGCATTGTTGAACAAGCTCTTTGAGGTTGTTCCATTCACGCATGTGATGCATTTGGCTGCACAAGCTGGTGTGAGGTATGCTATGGAGAATCCTGGTTCTTATGTTCATAGTAACATTGCTGGTTTTGTTAATTTGCTTGAGGTTTGTAAGAGTGTGAATCCTCAACCTGCTATTGTGTGGGCTTCTTCTAGTTCAGTTTATGGATTGAATACTAAGGTACCCTTTTCTGAGAGAGATAGGACTGATCAACCTGCTAGTTTGTATGCTGCTACTAAGAAAGCTGGTGAAGAGATTGCTCATACTTATAACCATATATATGGTCTTTCATTGACTGGTTTGAGGTTTTTCACTGTTTATGGTCCTTGGGGTAGGCCTGATATGGCCTACTTCTTCTTTACAAGGGATATTTTGAAGGGGAAGGCAATTCCAATCTTCGAGGCCGCGAATCATGGTACCGTTGCGAGGGATTTTACTTACATTGATGATATTGTGATGGGCTGCTTGGGTGCATTGGATACTGCAGAGAAGAGTACTGGCAGTGGTGGGAAGAAGAGGGGCCCGGCTCAGTTGAGGGTGTTCAATTTGGGGAATACTTCGCCTGTCCCGGTCAGTGACCTTGTTAGTATTTTGGAGAGGCTGTTGAAGGTTAAGGCGAAGAGGAATATAATGAAGTTGCCGCGAAATGGGGATGTGCAGTTTACTCACGCGAACATTAGTTATGCACAGAGGGAGCTTGGGTATAAGCCTGTGACGGATCTGCAGACTGGTTTGAAAAAATTCGTTAGGTGGTACCTGAATTACTATACTGGTGGGAAGAAAGCTGTTGAGTGA 1317 0.4799 MSQLKQMSHSDSAPSTPGKFKMEKASYFNRVRWYASPAKLALWSFILSAAILIFFFRSPATSPLPGDPSRRSLRTSNWGGPVWEKRVRSSARVRSRNGFSVLVTGAAGFVGTHVSAALKRRGDGVLGIDNFNDYYDPSLKRARQALLERTGVFIVEGDINDAALLNKLFEVVPFTHVMHLAAQAGVRYAMENPGSYVHSNIAGFVNLLEVCKSVNPQPAIVWASSSSVYGLNTKVPFSERDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAIPIFEAANHGTVARDFTYIDDIVMGCLGALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSDLVSILERLLKVKAKRNIMKLPRNGDVQFTHANISYAQRELGYKPVTDLQTGLKKFVRWYLNYYTGGKKAVE* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01257 438 PRINTS Nucleotide sugar epimerase signature 392 409 - -
Rops4g01257 438 PRINTS Nucleotide sugar epimerase signature 352 367 - -
Rops4g01257 438 PRINTS Nucleotide sugar epimerase signature 317 332 - -
Rops4g01257 438 PRINTS Nucleotide sugar epimerase signature 127 143 - -
Rops4g01257 438 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 97 431 IPR036291 -
Rops4g01257 438 Pfam NAD dependent epimerase/dehydratase family 101 338 IPR001509 -
Rops4g01257 438 Gene3D - 100 432 - -
Rops4g01257 438 PANTHER EPIMERASE-RELATED 83 431 - -
Rops4g01257 438 FunFam UDP-glucuronate 4-epimerase 3 100 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01257 Rops-Chr4 33458069 33460354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01257 4 436 Miscellaneous Gene Families AT4G00110 87.760 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01257 K08679 - gmx:100788739 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01257 4 33458069 33460354 Rops4g01257 4 33458069 33460354 ECH