Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0900 ATGCTACTTTCTCTCTCTACAATTTGGGCTCCATCAACACTTTCCCGCCTAAACTTTCTCCCCAAACCTTCGCTTTTCACTGCACTCACCACTTTCCGCAGAAACCAATTTCTACCCAAATGCTCGTCCGCTCTCAACCCGGCCTCGAAACGCGACGGCAATTTTGTCGTTTTGGGCATCGAAACAAGCTGCGACGACACCGCTGCAGCTGTCGTGAGAAGCAACGGTGAAATTCTGAGCCAAGTGGTGTCTTCTCAGGCAGATCTACTTGCAAAATATGGGGGTGTTGCTCCAAAAAAGGCAGAAGAAGCTCACTTGCAAGTGATAGACCAGGTTGTGCAAGAGGCTCTTGATAAAGCTGATATGACTGAGAAGGATCTCACTGCAGTTGCTGTCACCATAGGTCCTGGTTTAAGTCTCTGCCTTCGTGTGGGGGTGCAGAAAGCTCGTAGAATTGCTGGGGGCTTCAATTTACCAATTATTGGCGTACATCACATGGAGGCTCATGCTCTAGTGGCCAGGTTAATTGAGAAAGATTTGCAGTTTCCTTTCATGGCCCTACTTATTTCAGGTGGACACAATCTACTTATTCTTGCACGTGATCTTGGGCAATACATACAACTTGGAACTACAATAGACGATGCCATTGGTGAGGCATATGACAAGACAGCAAAATGGCTTGGACTTGATATGAGGAGAAGTGGTGGTCCTGCTATAGAGGAGCTTGCTAGGGAGGGTAATGCTGAATCAGTCAATTTTTCTATTCCGATGAAGCAGCACAAAGATTGCAACTTCTCCTATGCTGGTCTAAAAACCCAAGTACGGCTGGCAATTGAGTCAAAAAAGATTGATGCCAAAATTCCTATTTCTCCTGCTTGTACTGAAGACCGATTGTCACGGGCTGATATTGCTGCTTCTTTTCAGCGAGTTGCAGTGTTACATCTTGAGGAAAGGTGTGAACGAGCAATACAGTGGGCATTGAAGATGGAGCCTTCTATAAGATACTTGGTTGTCTCTGGTGGTGTTGCATCAAACCAATATGTTCGAGCTCAGCTTGATATGGTTGTGAAGAAGAACGGCCTGCAACTTGTATGCCCTCCTCCCCGGCTTTGTACTGATAATGGTGTAATGATTGCTTGGACTGGTATTGAGCATTTCCGGATGGGAAGATATGATCCTCCTCCCCCTGCGGAAGAGCCAGAAGATTTTGTGCATGATTTACGCCCAAGGTGGCCACTGGGGGAAGAATACGCTGAAGGAAAAAGTGAAGCACGCTCCTTAAAAACAGCTCGTGTCCATCCTTCTCTTACATCTCTCATTCAAGCATCATTGCAAAAGTGA 1341 0.4631 MLLSLSTIWAPSTLSRLNFLPKPSLFTALTTFRRNQFLPKCSSALNPASKRDGNFVVLGIETSCDDTAAAVVRSNGEILSQVVSSQADLLAKYGGVAPKKAEEAHLQVIDQVVQEALDKADMTEKDLTAVAVTIGPGLSLCLRVGVQKARRIAGGFNLPIIGVHHMEAHALVARLIEKDLQFPFMALLISGGHNLLILARDLGQYIQLGTTIDDAIGEAYDKTAKWLGLDMRRSGGPAIEELAREGNAESVNFSIPMKQHKDCNFSYAGLKTQVRLAIESKKIDAKIPISPACTEDRLSRADIAASFQRVAVLHLEERCERAIQWALKMEPSIRYLVVSGGVASNQYVRAQLDMVVKKNGLQLVCPPPRLCTDNGVMIAWTGIEHFRMGRYDPPPPAEEPEDFVHDLRPRWPLGEEYAEGKSEARSLKTARVHPSLTSLIQASLQK* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0900 446 Hamap tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 55 413 IPR022450 GO:0002949
Apr10g0900 446 Pfam tRNA N6-adenosine threonylcarbamoyltransferase 77 380 IPR000905 -
Apr10g0900 446 Gene3D - 57 388 - -
Apr10g0900 446 Gene3D - 183 366 - -
Apr10g0900 446 TIGRFAM gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 58 379 IPR017861 -
Apr10g0900 446 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 58 71 IPR017861 -
Apr10g0900 446 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 130 150 IPR017861 -
Apr10g0900 446 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 151 170 IPR017861 -
Apr10g0900 446 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 185 197 IPR017861 -
Apr10g0900 446 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 208 229 IPR017861 -
Apr10g0900 446 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 336 345 IPR017861 -
Apr10g0900 446 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE 54 429 IPR000905 -
Apr10g0900 446 TIGRFAM T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 57 386 IPR022450 GO:0002949
Apr10g0900 446 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE, MITOCHONDRIAL-RELATED 54 429 IPR022450 GO:0002949
Apr10g0900 446 SUPERFAMILY Actin-like ATPase domain 57 381 IPR043129 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0900 K01409 - gmx:100784367 768.074