Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu02g02218 ATGATCTTTCTTTATGTCAGCAAACTCAGATCATTGTCTTCTTTGATCCCAGCCAAACTTTTAGGCTTTTGTTCTTGTTTACATACTCGCTCATTGTTGCCCTATGCCAAACACGTCAATTGGAACACAACCCACAGTTTTGTTCATAGAAACCCACTTCTTTCTCTCGTAGAAAGATGTAAATCCTTGATTCAGTTAAAGCAAATTCAAGCTCAAATGACCTTAACAGGCTTAATAGACAATAGCTTTGCTGCAAGTCGCCTTGTTGCTTTCTGCGCGCTCTCAGAATCTCAAACACTTGGATATTGCACAAAAATTTTATATCATACAAACGAACCAAATGTCTTTTCTTGGAATACGACAATTAGGGGATATATAGAAAGTGGAGACTTAGATGGAGCTCTTGTTTTGTACAAGAAAATGTTGCAGTATGATGGGTTGAAGCCAGATAATCACACTTATCCGTTATTGCTTAAAGCATGTTCTTCTCCTTCTCTAAATTGTGTAGGTCATACTATAGTTGGACATGTATTAAAGTTTGGTTTTGAATTTGACTTATTTGTGCACAATGCATTGATCTCTATGCTACTGTCCTATGGGGACTTAGAGGCAGCATATGATGTGTTCAATAGAGGATGTGTGAGGGACCTGGTAACTTGGAATGCGATGATCACGGGATGTGTTAGAAGAGGACTGGAGATTGAGGCTATAAAACTTTATCGAGAAATGGAGGCTGAGAAGGTGAAACCAAATGAGATTACAATGATTGGGTTGGTTTCTTCTTGTTCTCGGTTACATGATTTGAATCTTGGCAGAGAATTTCATTGTTACATCGAAGAACATAAGCTTGAGTTGACAGTTCCACTTATTAATGCACTTATGGACATGTATGTGAAGTGTGGAGACCTATTGGCTGCACAAGTTTTGTTTGATAACATGGCACAGAAGACCATTGTTTCATGGACTACAATGGTTCTTGGATATGCCAGATTCGGTTGTCTTGATATTGCTAGGAAAATTTTATATAAAGTTCCAGAGAAGAGTGTTGTTCCTTGGAATGCAATCATCAGTGGCTGTGTTCAATCCAAGCATAGTAAGGAGGCATTGACTTTATTCCATGAAATGCAAATTAATAATATAGAGCCTGATAAAGTGACCATGATTAACTGCTTGTGTGCATGTTCACAACTAGGAGCACTTGATGTTGGAATATGGATTCACCATTATATTGAAAGAAAAAATCTTTCTGTAGATGTCACCTTGGGAACTGCTCTAGTTGACATGTATGCCAAGTGTGGAAATATTGACAAGGCTCTCCAGGTTTTTCAAGAGCTTCCTCAAAGAAATTGTTTGACCTGGACAGCCATTATTTGCGGTTTAGCATTTAATGGGAATTCTTGTGATGCTATATACTATTTCTCAGAAATGATTCGTGTTGGATTGATGCCTGATGAGATCACCTTTCTTGGTGTCTTATCAGCTTGTTGCCATGGAGGTTTAGTTGAAGAAGGCCGCAAATATTTTTCCCAAATGAGCTCCAAATTCAATATATTCCCTAAGCTTAAACACTACTCTTGCATGGTGGATCTTCTAGGAAGGGCTGGTCATCTGGAGGATGCTGAAGAGCTTATCCAAAATATGCCTATAGAAGCGGATGCTGCGGTATGGGGTGCTTTATTCTTTGCTTGTCGTGTTCATGGCAATGTTCAGATTGGGAAGAGGGCAGCTATGAAGCTCCTTGAGATGGATCCTCAAGATAGTGGGAATTATGTTCTCCTTGCTAGCATGTACAGTGAAGCGAAAATGTGGAAGGAGGCAAGGAGTGCAAGGAAACTAATGAAGGAAAGAGGGGTTGATAAGCTTCCTGGTTGCAGCTCCATTGAGATCAATGGCATTGTTCATGAGTTTGTGGTAAAGGATGCATTACATCCAGAGTCTGAAATGATTTATGAAAGCCTGATTTCTTTGACAAAGCAACTGGAGCTTCTTGAAGTTACATCCGCTGTTCCAGCTTCTAGAGATAATCTTTCCTTCTAA 2037 0.3937 MIFLYVSKLRSLSSLIPAKLLGFCSCLHTRSLLPYAKHVNWNTTHSFVHRNPLLSLVERCKSLIQLKQIQAQMTLTGLIDNSFAASRLVAFCALSESQTLGYCTKILYHTNEPNVFSWNTTIRGYIESGDLDGALVLYKKMLQYDGLKPDNHTYPLLLKACSSPSLNCVGHTIVGHVLKFGFEFDLFVHNALISMLLSYGDLEAAYDVFNRGCVRDLVTWNAMITGCVRRGLEIEAIKLYREMEAEKVKPNEITMIGLVSSCSRLHDLNLGREFHCYIEEHKLELTVPLINALMDMYVKCGDLLAAQVLFDNMAQKTIVSWTTMVLGYARFGCLDIARKILYKVPEKSVVPWNAIISGCVQSKHSKEALTLFHEMQINNIEPDKVTMINCLCACSQLGALDVGIWIHHYIERKNLSVDVTLGTALVDMYAKCGNIDKALQVFQELPQRNCLTWTAIICGLAFNGNSCDAIYYFSEMIRVGLMPDEITFLGVLSACCHGGLVEEGRKYFSQMSSKFNIFPKLKHYSCMVDLLGRAGHLEDAEELIQNMPIEADAAVWGALFFACRVHGNVQIGKRAAMKLLEMDPQDSGNYVLLASMYSEAKMWKEARSARKLMKERGVDKLPGCSSIEINGIVHEFVVKDALHPESEMIYESLISLTKQLELLEVTSAVPASRDNLSF 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu02g02218 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Adu02g02218 678 TIGRFAM PPR: pentatricopeptide repeat domain 524 547 IPR002885 -
Adu02g02218 678 TIGRFAM PPR: pentatricopeptide repeat domain 352 383 IPR002885 -
Adu02g02218 678 TIGRFAM PPR: pentatricopeptide repeat domain 116 150 IPR002885 -
Adu02g02218 678 TIGRFAM PPR: pentatricopeptide repeat domain 487 514 IPR002885 -
Adu02g02218 678 TIGRFAM PPR: pentatricopeptide repeat domain 218 252 IPR002885 -
Adu02g02218 678 TIGRFAM PPR: pentatricopeptide repeat domain 423 450 IPR002885 -
Adu02g02218 678 Pfam PPR repeat family 113 162 IPR002885 -
Adu02g02218 678 Pfam PPR repeat family 347 392 IPR002885 -
Adu02g02218 678 Pfam PPR repeat family 449 497 IPR002885 -
Adu02g02218 678 Pfam PPR repeat family 216 262 IPR002885 -
Adu02g02218 678 Gene3D Tetratricopeptide repeat domain 451 620 IPR011990 GO:0005515
Adu02g02218 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Adu02g02218 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Adu02g02218 678 Pfam PPR repeat 523 547 IPR002885 -
Adu02g02218 678 Pfam PPR repeat 291 316 IPR002885 -
Adu02g02218 678 Pfam PPR repeat 188 211 IPR002885 -
Adu02g02218 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 484 514 IPR002885 -
Adu02g02218 678 Gene3D Tetratricopeptide repeat domain 173 270 IPR011990 GO:0005515
Adu02g02218 678 Gene3D Tetratricopeptide repeat domain 272 402 IPR011990 GO:0005515
Adu02g02218 678 Gene3D Tetratricopeptide repeat domain 52 167 IPR011990 GO:0005515
Adu02g02218 678 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 38 665 - -
Adu02g02218 678 PANTHER OS10G0400250 PROTEIN 38 665 - -
Adu02g02218 678 Pfam E motif 566 628 IPR046848 -
Adu02g02218 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 149 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu02g02218 Adu-Chr2 86621937 86623973 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu02g02218 105 661 Glycoside Hydrolase AT3G49170 30.961 1.72e-88 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu02g02218 - - adu:110273047 1179.85