Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01592 ATGCTACTCTCTCTCGTTACAATGGCGTCTCCATCAACACTTTTGCGTATAAAGCTCTTACCAAAGCCACCTTCGCTTTTCTGCGCACTCACCAATCTCCGTAGAAACCAACTTCCACTCAAATCGCCATTTACGACATCTTCCAGCACAACCTCCTCCTCTTCGAAACGCCATGACGATGTCGTCGTTTTGGGGATCGAAACTAGCTGCGACGACACCGCTGCGGCTGTCGTGAGAAGCGACGGTGAGATTCTGAGCCAAGTGGTGTCATCTCAGGCAGATCTGCTTGCAAAATATGGAGGCGTTGCTCCAAAAATGGCAGAAGAAGCTCACTCACAAGTTATAGACAAGGTTGTGCAAGAAGCCCTTGATAAAGCTTATATGACTGAGAAAGATCTCACTGCTGTTGCTGTTACTATTGGTCCTGGATTGAGTCTCTGCCTTCGTGTGGGGGTTCAGAAAGCCAGGAGAATTGCTGGCGGATTTAATTTACCAATTATTGGCGTACATCACATGGAAGCTCATGCTCTGGTGGCCAGGTTAATTGAGAAAGATTTGCAGTTTCCTTTCATGGCCCTACTTATTTCAGGGGGGCACAATTTACTCATTCTTGCACGTGATCTTGGACAATACATACAACTTGGAACTACAATAGATGATGCTATTGGTGAGGCATACGACAAAACAGCAAAATGGCTTGGACTTGATTTGAGGAGAAGTGGTGGTCCTGCTATTGAGAAGCTTGCTATGGAGGGAAATGCTGAATCAGTCAAGTTTTCTATTCCAATGAAGCAGCACAAAGATTGCAACTTCTCCTATGCTGGTCTTAAAACCCAAGTACGGCTGGCAATTGAGTCCAAAAAGATTGATGCCAAAATTCCAATCACTTCGGCAAGTAAGGAAGATAGACTGTCACGGGCTGATATTGCTGCTTCTTTTCAGCGAACTGCTGTGTTACATCTTGAAGAAAGGTGTGACCGAGCAATACAATGGGCATTGAAGATGGAGCCTTCTATAAGACACTTGGTTGTCTCTGGTGGGGTTGCATCAAATCAATATGTACGGGCCCGACTTGATATGGTTGCAAAGAAGAATGGCCTGCAACTTTTATGCCCTCCTCCTCAGCTCTGTACTGATAATGGTGTAATGATTGCTTGGACTGGTATTGAGCATTTCCGCATGGGAAGATATGACCCTCCTCCGCCTGCCGAAGAACCTGAAGACTTTGTGTATGATATACGCCCAAGGTGGCCGCTGGGAGAAGAGTATGCTGAAGGAAAAAGTGAAGCACGTTCCTTAAGAACAGCTCGTATTCATCCATCTCTTACATCTATAATTCAAGCATCATTGCAACAGTGA 1359 0.4547 MLLSLVTMASPSTLLRIKLLPKPPSLFCALTNLRRNQLPLKSPFTTSSSTTSSSSKRHDDVVVLGIETSCDDTAAAVVRSDGEILSQVVSSQADLLAKYGGVAPKMAEEAHSQVIDKVVQEALDKAYMTEKDLTAVAVTIGPGLSLCLRVGVQKARRIAGGFNLPIIGVHHMEAHALVARLIEKDLQFPFMALLISGGHNLLILARDLGQYIQLGTTIDDAIGEAYDKTAKWLGLDLRRSGGPAIEKLAMEGNAESVKFSIPMKQHKDCNFSYAGLKTQVRLAIESKKIDAKIPITSASKEDRLSRADIAASFQRTAVLHLEERCDRAIQWALKMEPSIRHLVVSGGVASNQYVRARLDMVAKKNGLQLLCPPPQLCTDNGVMIAWTGIEHFRMGRYDPPPPAEEPEDFVYDIRPRWPLGEEYAEGKSEARSLRTARIHPSLTSIIQASLQQ 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01592 452 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE 55 425 IPR000905 -
Viun10g01592 452 NCBIfam tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD 64 385 IPR017861 -
Viun10g01592 452 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 64 77 IPR017861 -
Viun10g01592 452 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 157 176 IPR017861 -
Viun10g01592 452 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 191 203 IPR017861 -
Viun10g01592 452 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 214 235 IPR017861 -
Viun10g01592 452 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 136 156 IPR017861 -
Viun10g01592 452 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 342 351 IPR017861 -
Viun10g01592 452 SUPERFAMILY Actin-like ATPase domain 63 387 IPR043129 -
Viun10g01592 452 Gene3D - 63 394 - -
Viun10g01592 452 Hamap tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 61 419 IPR022450 GO:0002949
Viun10g01592 452 FunFam Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial 194 372 - -
Viun10g01592 452 NCBIfam tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD 63 392 IPR022450 GO:0002949
Viun10g01592 452 Gene3D - 189 372 - -
Viun10g01592 452 FunFam Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial 63 193 - -
Viun10g01592 452 Pfam tRNA N6-adenosine threonylcarbamoyltransferase 83 386 IPR000905 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01592 Viun-Chr10 30888227 30899175 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01592 K01409 - gmx:100784367 771.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01592 10 30888227 30899175 Viun10g01592 10 30888227 30899175 ECH