Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0220 ATGGTACTTTCTCTCTCTACATTAGGGTTTTCTTCAGCACTTTCGCGCCTAAACTTCTTCCCAAAGCCACCACCTTCTCTTTTCTCCGCACTCACCACTTTCCGCAGAAACCAACTTCCACTCAAATCGTCGCTCGCCGCATCGAAACGTGACGGCGATGTTGTCGTTTTGGGCATCGAAACCAGCTGCGACGATACCGCCGCTGCTGTCGTGAGAAGTGACGGTGAAATTCTCAGCCAAGTAGTGTCTTCTCAGGCAGACCTGCTTGCGAAATATGGAGGTGTTGCTCCAAAAATGGCAGAAGAAGCTCACTCAAAAGTTATAGACCAGGTTGTGCAAGAAGCCCTTGATAAAGCTTATCTGACCGAGAAGGATCTTACTGCTGTTGCTGTTACTATTGGTCCTGGTTTGAGTCTCTGCCTTCGTGTGGGGGTGCAGAAAGCCCGGAAAATTGCTGGCGGATTTAATTTACCAATTATTGGCATACATCACATGGAAGCTCATGCTCTGGTTGCCAGGTTAATTGAGAAAGATTTGCAGTTTCCATTCATGGCCCTACTTATTTCAGGGGGACACAATTTACTCGTTCTTGCTCGTGATCTTGGGCAGTACATACAACTTGGAACTACGATAGATGATGCTATCGGTGAGGCATATGACAAGACAGCAAAATGGCTCGGACTGGATTTGAGGAGAAGTGGTGGTCCTGCTATTGAGAAGCTTGCTATGGAGGGTAATGCTGAATCAGTCAAGTTTTCTATTCCAATGAAGCAGCACAAAGACTGCAATTTTTCCTATGCTGGTCTAAAAACCCAAGTACGTCTGGCAATTGAGTCCAAAAAGATTGATGCCAAAATTCCAATTTCTTCAGCAAGTAATGGAGATCGACTGTCACGGGCTGATATTGCTGCTTCTTTTCAGCGAATTGCTGTGTTACATCTTGAGGAGAGGTGTGAACGAGCAATACAGTGGGCATTGAAGATGGAGCCTTCCATAAGACACTTGGTTGTCTCTGGTGGAGTTGCATCAAATCAATATGTCCGAGCCCGGCTTGATATGGTTGTGAAGAAGAATGGCCTGCAACTTGTATGCCCACCTCCTCGGCTCTGTACTGATAATGGTGTAATGATTGCTTGGACTGGTATTGAGCACTTCCGCATGGGAAGATATGACCCTCCTCCTCCTGCAGAAGAACCTGAAGACTTTGTGTATGATATACGCCCAAGGTGGCCGCTGGGGGAAGAATATGCTGAAGGAAAAAGTGTAGCACGTTCGTTAAGAACAGCCCGCATTCATCCTTCTCTTACATCTATAATTCTAGCATCATTGCAACAATGA 1338 0.4611 MVLSLSTLGFSSALSRLNFFPKPPPSLFSALTTFRRNQLPLKSSLAASKRDGDVVVLGIETSCDDTAAAVVRSDGEILSQVVSSQADLLAKYGGVAPKMAEEAHSKVIDQVVQEALDKAYLTEKDLTAVAVTIGPGLSLCLRVGVQKARKIAGGFNLPIIGIHHMEAHALVARLIEKDLQFPFMALLISGGHNLLVLARDLGQYIQLGTTIDDAIGEAYDKTAKWLGLDLRRSGGPAIEKLAMEGNAESVKFSIPMKQHKDCNFSYAGLKTQVRLAIESKKIDAKIPISSASNGDRLSRADIAASFQRIAVLHLEERCERAIQWALKMEPSIRHLVVSGGVASNQYVRARLDMVVKKNGLQLVCPPPRLCTDNGVMIAWTGIEHFRMGRYDPPPPAEEPEDFVYDIRPRWPLGEEYAEGKSVARSLRTARIHPSLTSIILASLQQ* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0220 445 Pfam tRNA N6-adenosine threonylcarbamoyltransferase 76 379 IPR000905 -
Gso3g0220 445 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 57 70 IPR017861 -
Gso3g0220 445 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 129 149 IPR017861 -
Gso3g0220 445 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 150 169 IPR017861 -
Gso3g0220 445 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 184 196 IPR017861 -
Gso3g0220 445 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 207 228 IPR017861 -
Gso3g0220 445 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 335 344 IPR017861 -
Gso3g0220 445 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE, MITOCHONDRIAL-RELATED 53 423 IPR022450 GO:0002949
Gso3g0220 445 TIGRFAM T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 56 385 IPR022450 GO:0002949
Gso3g0220 445 TIGRFAM gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 57 378 IPR017861 -
Gso3g0220 445 Hamap tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 54 412 IPR022450 GO:0002949
Gso3g0220 445 Gene3D - 56 387 - -
Gso3g0220 445 SUPERFAMILY Actin-like ATPase domain 56 380 IPR043129 -
Gso3g0220 445 Gene3D - 182 365 - -
Gso3g0220 445 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE 53 423 IPR000905 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0220 Gso-Chr3 3047407 3059894 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0220 K01409 - gmx:100784367 855.899