Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2590 ATGCCTAAAAATGGAAGCTTTATGGGGAACTGTAATGTGGGTAAGGGAAATTCCGGCGTGTTTAAGGTTTCTGCCTCGGTCGCCGCCGTAGAGAAGCCGTCGTCGACGCCGGAGATCGTGTTGGAACCCATCAGAGAAATCTCGGGTACCATCACATTGCCAGGGTCTAAGTCTCTGTCTAATCGATGTCTGCTTCTTGCTGCTCTCTCTGAGggaACAACTGTTGTAGACAATTTGTTGTATAGCGAGGATATTCATTACATGCTTGGTGCATTAAGGACGCTTGGACTGCATGTGGAAGATGACAAAACAACCAAACAAGCAATTGTGGAAGGCTGTGGGGGATTATTTCCCATTGGTAGAGAATCTAAAGAGGAAATCAATTTCTTCCTTGGAAATGCTGGTACTGCAATGCGTACTTTGACAGCAGCTTTGATTGCTGCAGGTGGAAATGCAAGCTACATACTTGATGGAGTGCCCCGAATGAGAGAGAGGCCAATTGGGGATTTGGTTGCTGGTCTTAAGCAGCTTGGTGCGGATGTTGATTGCTTTCTTGGCACAAACTGTCCGCCTGTTCAAATAAATGGGAAGGGAGGACTTCCTGGGGGAAAGGTGAAACTGTCTGGATCACTTAGCAGTCAATACCTGTCTTCTTTGCTTATGGCAGCTCCTTTAGCTCTTGGTGATGTGGAAATTGAGATTGTTGATAGACTGGTCTCTGCTCCATTTGTTGAAATGACTACAAAGTTGATGGAGCGCTTTGGAGTTTCTGTGGAACACAGTGATAATTGGGATAGGTTCTTGGTCCATGGAGGTCAAGAGTACAAGTCTCCTGGCAATGCTTTTGTTGAAGGTGATGCTTCAAGTGCCAGTTACTTCCTAGCTGGTGCAGCAGTTACTGGTGGGACTATCACTGTTGAAGGCTGTGGCACAAGCAGTTTACAGGGAGATGTAAAATTTGCTGAAGTTCTTGAAAAGATGGGAGCTAAAGTTACATGGACAGAGAACAGTGTCACTGTTACTGGACCACCACGAGATTCTTCTGGTCGAAAAGTCTTGCAAGGCATTGATATCAATATGAACAAGATGGCAGATGTTGGCCTGACACTTGCTGTTGTTGCACTATTTGCTAATGGTCCCACTGCTATAAGAGATGTTGAAAGTTGGAGAGTTAAAGAGACAGAGAGGATGAAAGCAGTCTGCACAGAACTCAGAAAGCTGGGAGCAACAGTTGAAGAAGGTCCTGATTACTGTGTGATTACTCCACCTGAGAAATTGAATGTCACAGCTATAGACACATATGATGACCATAGAATTGCCATGGCATTCTCTCTTGCTGCTTGTGGGGATGTTCCAGTAACCATCAAGGATCCTGGCTGCACCAGGAAGTCATTTCCTGACTATTTTGAAGTCCTAGAGAGGTTCACCGAGCACTAA 1437 0.453 MPKNGSFMGNCNVGKGNSGVFKVSASVAAVEKPSSTPEIVLEPIREISGTITLPGSKSLSNRCLLLAALSEGTTVVDNLLYSEDIHYMLGALRTLGLHVEDDKTTKQAIVEGCGGLFPIGRESKEEINFFLGNAGTAMRTLTAALIAAGGNASYILDGVPRMRERPIGDLVAGLKQLGADVDCFLGTNCPPVQINGKGGLPGGKVKLSGSLSSQYLSSLLMAAPLALGDVEIEIVDRLVSAPFVEMTTKLMERFGVSVEHSDNWDRFLVHGGQEYKSPGNAFVEGDASSASYFLAGAAVTGGTITVEGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDSSGRKVLQGIDINMNKMADVGLTLAVVALFANGPTAIRDVESWRVKETERMKAVCTELRKLGATVEEGPDYCVITPPEKLNVTAIDTYDDHRIAMAFSLAACGDVPVTIKDPGCTRKSFPDYFEVLERFTEH 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2590 478 CDD EPSP_synthase 47 475 IPR006264 GO:0003866|GO:0009073
Ssu4g2590 478 TIGRFAM aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 49 477 IPR006264 GO:0003866|GO:0009073
Ssu4g2590 478 PANTHER 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE, CHLOROPLASTIC 19 478 - -
Ssu4g2590 478 SUPERFAMILY EPT/RTPC-like 39 474 IPR013792 GO:0003824
Ssu4g2590 478 PIRSF EPSPS 36 478 IPR006264 GO:0003866|GO:0009073
Ssu4g2590 478 ProSitePatterns EPSP synthase signature 2. 390 408 IPR023193 -
Ssu4g2590 478 Hamap 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 45 478 IPR006264 GO:0003866|GO:0009073
Ssu4g2590 478 Pfam EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 42 472 IPR001986 GO:0016765
Ssu4g2590 478 Gene3D Enolpyruvate transferase domain 272 476 IPR036968 GO:0016765
Ssu4g2590 478 PANTHER AROM/DEHYDROQUINATE SYNTHASE 19 478 - -
Ssu4g2590 478 ProSitePatterns EPSP synthase signature 1. 129 143 IPR023193 -
Ssu4g2590 478 Gene3D Enolpyruvate transferase domain 55 267 IPR036968 GO:0016765
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2590 Ssu-Chr4 65641123 65656652 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2590 K00800 - gmx:100789268 833.172