Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1398 ATGGAGGTGGGTATGCTACCAATCTCAGCATCAAAGAGAGGAAAGCTCTTAGCAGCTGGTTACACCACTCTCGATGCCATTGCTCGCTCCTCCCCAACCCACCTTGCTCGAGATATTGAAGTCTCTGAGGATGAAGCTTCAGAAATTCTCAATTTTGCAACCAAAACTAGTGCTTTGAACAGATCAAATGGGAGTAACATTAATCTTGTTGAGGTAGGTGGACAGACTGCTTGGGATATGCTCAATGAGGAAAAGTTTTCTTCTTGTATTACCACATCTTGCGTGGATTTGGATAACATCCTTGGTGGAGGAATTAATTGCAAAGAAGTCACTGAGATAGGTGGAGTTCCAGGCATTGGTAAAACACAAATTGGGATTCAACTTGCAGTAAATGTTCAGATTCCACTAGAATATGGTGGCCTAGGTGGGAAGGCAATATACATTGACACCGAAGGAAGCTTTATGGTTGAACGTGTTCTGCAAATTGCTGAAGCATGCATAGAAGACATGTCAGAATATAGCCACCACTTTCACAAGGATGTTCAAGCTTGTGGAGTTAAAATGCATCCTAATAATATCTTGGAAAATATATATTATTTTCGTGTTTGCAGCTATACTGAACAAATTGCTTTGGTAAATTACTTAGACAAATTCATCTCGGAGCATAGAGATGTAAAGATAGTCATTATCGACAGTGTTACTTTCCACTTCCGCCAAGACTTTGAAGATATGGCTCTCAGGACTCGGTTACTAAGTGAAATGGCTTTGAAGTTGATGAAGCTTGGAAGAAAGTTTTGTTTGGCTGTTGTTCTGTTGAATCAAGTGACAACCAAGCACATTGAAGGTTCATTTCAATTGACCCTTGCACTGGGCGATAGCTGGTCACATTCATGCACGAACCGGATCATCTTATATTGGAATGGCAGTGAACGTCATGCATTTATTGACAAGTCCCCTTCTCTTAAATCAGCATCTGCACCTTATTCTGTGACCTCTAGGGGGATACGTAATTCTACTTCAGGCTCTAAAAGAATCAAGATGATGTGA 1047 0.4088 MEVGMLPISASKRGKLLAAGYTTLDAIARSSPTHLARDIEVSEDEASEILNFATKTSALNRSNGSNINLVEVGGQTAWDMLNEEKFSSCITTSCVDLDNILGGGINCKEVTEIGGVPGIGKTQIGIQLAVNVQIPLEYGGLGGKAIYIDTEGSFMVERVLQIAEACIEDMSEYSHHFHKDVQACGVKMHPNNILENIYYFRVCSYTEQIALVNYLDKFISEHRDVKIVIIDSVTFHFRQDFEDMALRTRLLSEMALKLMKLGRKFCLAVVLLNQVTTKHIEGSFQLTLALGDSWSHSCTNRIILYWNGSERHAFIDKSPSLKSASAPYSVTSRGIRNSTSGSKRIKMM* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1398 348 Gene3D - 71 339 IPR027417 -
Lja3g1398 348 ProSiteProfiles RecA family profile 1. 86 275 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Lja3g1398 348 CDD Rad51_DMC1_radA 90 336 IPR033925 GO:0003677
Lja3g1398 348 PIRSF Rad51 1 340 IPR016467 -
Lja3g1398 348 SUPERFAMILY Rad51 N-terminal domain-like 4 56 IPR010995 GO:0000166
Lja3g1398 348 PANTHER DNA REPAIR PROTEIN RAD51 HOMOLOG 3 RAD51C 1 347 - -
Lja3g1398 348 Gene3D - 14 67 - -
Lja3g1398 348 Pfam Rad51 74 337 IPR013632 -
Lja3g1398 348 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 336 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1398 Lja-Chr3 14771396 14774990 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1398 K10870 - gmx:100527406 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1398 3 14771396 14774990 Lja3g1398 3 14771396 14774990 ECH