Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2325 ATGAACTTTCTTTATATCAGCAAACTCAGATCATTGTCTTCTTTGATCCCAGCCAAACTTTTAGGCTTTTGTTCTTGTTTACATACTCGCTCATTGTTGCCCTATGCCAAACACATCAATTGGAACACAACCCACAGTTTTGTTCATAGAAACCCACTTCTTTCTCTCGTAGAAAGATGTAAATCCTTGGTTCAGTTAAAGCAAATTCAAGCTCAAATGACCTTAACAGGCTTAATAGACAATAGCTTTGCTGCAAGTCGCCTTGTTGCTTTCTGCGCTCTCTCAGAATCTCAAACACTTGGATATTGCACAAAAATTTTATATCATACAAACGAACCAAATGTCTTTTCTTGGAATACGACAATTAGGGGATATATCGAAAGTGGAGACTTAGATGGAGCTCTTGTTTTGTACAAGAAAATGTTGCAGTATGATGGGTTGAAGCCAGATAATCATACTTACCCATTATTGCTTAAAGCATGTTCTTCTCCTTCTCTAAATTGTGTAGGTCATACTATACTTGGACATGTATTAAAGTTTGGTTTTGAATTTGACTTATTTGTGCACAATGGATTGATCTCTATGCTACTGTCCTATGGGGACTTAGAGGCAGCATATGATGTGTTCAATAGAGGATGTGCGAGGGACCTGGTAACTTGGAATGCTATGATCACGGGATGTGTTAGAAGAGGACTGGAGATTGAGGCTATAAAACTTTATCGGGAAATGGAGGCTGAGAAGGTGAAACCAAATGAGATTACAATGATTGGGTTGGTTTCTTCTTGTTCTCGGTTACATGATTTGAATCTTGGCAGAGAATTTCATTGTTACATCGAAGAACATAAGCTTGAGTTGACAGTTCCACTTATTAATGCACTTATGGACATGTATGTGAAGTGTGGAGACCTATTGGCTGCACAAGTTTTATTTGATAACATGGCACAGAAGACCATTGTTTCATGGACTACAATGGTTCTTGGATATGCCAGATTCGGTTACCTTGATATTGCTAGGAAAATTTTATATAAAGTTCCAGAGAAGAGTGTTGTTCCTTGGAATGCAATCATCAGTGGCTGTGTTCAATCCAAGCATAGTAAGGAGGCATTGACTTTATTCCATGAAATGCAAATTAATAATATAGAGCCTGATAAAGTGACCATGATTAACTGCTTGTGTGCATGTTCACAACTAGGAGCACTTGATGTTGGAGTATGGATTCACCATTATATTGAAAGAAAAAATCTTTCTGTAGACGTCACCTTGGGAACTGCTCTAGTTGACATGTATGCCAAGTGCGGAAATATTGACAAGGCTCTCCAAGTTTTTCAAGAGCTTCCTCAAAGAAATTGTTTGACATGGACAGCCATTATTTGCGGTTTAGCATTTAATGGGAATTCCTGTGATGCTATATACTATTTCTCAGAAATGATTCGTGTTGGATTGATGCCTGATGAGATCACCTTTCTTGGTGTCTTATCAGCTTGTTGCCATGGAGGTTTAGTTGAAGAAGGCCGCAAATATTTTTCCCAAATGAGCGCCAAATTCAATATATTCCCTAAGCTTAAACACTACTCTTGCATGGTGGATCTTCTAGGAAGGGCTGGTCATCTGGAGGATGCTGAAGAGCTTATCCAAAATATGCCTATGGAAGCGGATGCTGCGGTATGGGGTGCTTTATTCTTTGCTTGTCGTGTTCATGGCAATGTTCAGATTGGGAAGAGGGCAGCTATGAAGCTCCTTGAGATGGATCCTCAAGATAGTGGGAATTATGTTCTCCTTGCTAGCATGTACAGTGAAGCGAAAATGTGGAAGGAGGCAAGGAGTGCAAGGAAACTAATGAAGGAAAGAGGGGTAGATAAGCTTCCTGGTTGCAGCTCCATTGAGATCAATGGCATTGTTCATGAGTTTGTGGTAAAGGATGCATTACATCCACAGTCTGAAATGATTTATGAAAGCCTGATTTCTTTGACAAAGCAACTGGAGCTTGAAGTTACATCCGCAGTTCCAGCTTCTAGAGATAATCTTTCCTTCTAA 2034 0.3948 MNFLYISKLRSLSSLIPAKLLGFCSCLHTRSLLPYAKHINWNTTHSFVHRNPLLSLVERCKSLVQLKQIQAQMTLTGLIDNSFAASRLVAFCALSESQTLGYCTKILYHTNEPNVFSWNTTIRGYIESGDLDGALVLYKKMLQYDGLKPDNHTYPLLLKACSSPSLNCVGHTILGHVLKFGFEFDLFVHNGLISMLLSYGDLEAAYDVFNRGCARDLVTWNAMITGCVRRGLEIEAIKLYREMEAEKVKPNEITMIGLVSSCSRLHDLNLGREFHCYIEEHKLELTVPLINALMDMYVKCGDLLAAQVLFDNMAQKTIVSWTTMVLGYARFGYLDIARKILYKVPEKSVVPWNAIISGCVQSKHSKEALTLFHEMQINNIEPDKVTMINCLCACSQLGALDVGVWIHHYIERKNLSVDVTLGTALVDMYAKCGNIDKALQVFQELPQRNCLTWTAIICGLAFNGNSCDAIYYFSEMIRVGLMPDEITFLGVLSACCHGGLVEEGRKYFSQMSAKFNIFPKLKHYSCMVDLLGRAGHLEDAEELIQNMPMEADAAVWGALFFACRVHGNVQIGKRAAMKLLEMDPQDSGNYVLLASMYSEAKMWKEARSARKLMKERGVDKLPGCSSIEINGIVHEFVVKDALHPQSEMIYESLISLTKQLELEVTSAVPASRDNLSF* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2325 677 Pfam E motif 566 628 IPR046848 -
Ahy12g2325 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Ahy12g2325 677 Pfam PPR repeat 423 450 IPR002885 -
Ahy12g2325 677 Pfam PPR repeat 291 316 IPR002885 -
Ahy12g2325 677 Pfam PPR repeat 523 548 IPR002885 -
Ahy12g2325 677 Gene3D Tetratricopeptide repeat domain 47 167 IPR011990 GO:0005515
Ahy12g2325 677 Gene3D Tetratricopeptide repeat domain 171 268 IPR011990 GO:0005515
Ahy12g2325 677 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 38 664 - -
Ahy12g2325 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Ahy12g2325 677 Gene3D Tetratricopeptide repeat domain 353 488 IPR011990 GO:0005515
Ahy12g2325 677 Gene3D Tetratricopeptide repeat domain 490 657 IPR011990 GO:0005515
Ahy12g2325 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Ahy12g2325 677 PANTHER OS10G0400250 PROTEIN 38 664 - -
Ahy12g2325 677 Gene3D Tetratricopeptide repeat domain 269 351 IPR011990 GO:0005515
Ahy12g2325 677 TIGRFAM PPR: pentatricopeptide repeat domain 487 514 IPR002885 -
Ahy12g2325 677 TIGRFAM PPR: pentatricopeptide repeat domain 524 549 IPR002885 -
Ahy12g2325 677 TIGRFAM PPR: pentatricopeptide repeat domain 116 150 IPR002885 -
Ahy12g2325 677 TIGRFAM PPR: pentatricopeptide repeat domain 218 252 IPR002885 -
Ahy12g2325 677 TIGRFAM PPR: pentatricopeptide repeat domain 423 450 IPR002885 -
Ahy12g2325 677 TIGRFAM PPR: pentatricopeptide repeat domain 352 383 IPR002885 -
Ahy12g2325 677 Pfam PPR repeat family 113 162 IPR002885 -
Ahy12g2325 677 Pfam PPR repeat family 347 392 IPR002885 -
Ahy12g2325 677 Pfam PPR repeat family 216 262 IPR002885 -
Ahy12g2325 677 Pfam PPR repeat family 451 497 IPR002885 -
Ahy12g2325 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 149 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2325 Ahy-Chr12 110792344 110795442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2325 105 661 Glycoside Hydrolase AT3G49170 30.961 1.12e-88 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2325 - - adu:110273047 1170.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2325 12 110792344 110795442 Ahy2g2009 2 94835738 94838727 hybridization