Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0851 ATGTTTATCCTGTTTGTCAACAAACTCAGATTCAGACACCCTTTAAAAATCCCACTTTTAGGTCTGCTTTGTTGTTTGCATACTCGTTCCTTGTCTCCTTTTGTAAAACCCATCAATTGGAACACCTCCCACAGCTTCGTTCGAAACAACCCTCTCCTTTCTCTCTTGGAAAGGTGCCAGTCCTTACTCCAGTTAAAGCAAATCCAGGCCCAGATGATCCTGACCGGCTTGATTGACGATAGCTTTGCCGCAAGTCGCCTTGTTACGTTCTGTGCTTTATCTGAATCGCAGGCCCTTGAGTATTGTACCAAGATCTTGTATTGGATCCGAGAACCAAATGTATTTTCTTGGAATGTGACAATTAGGGGATTTGTGGAAAGCGGGGACTTAGAAGGAGCTGTTTTGTTGTACAAGAGAATGTTGCAATGTGGTGTTAAACCAGATAATCATACTTGTCTTTTCTTGCTCAGGGCTTGTTCTTTCCCATCTATGAATTTTGTTGGTTATACTGTACTTGGGCATGTATTGAAGTTTGGTTTTGAATTTGATATATTTGTGCACAATGCATCAATAACTATGCTACTCTCATATGGAGAGTTGAAGGCAGCTTATGATGTGTTCAATAATGGTTGTGCGAGAGACTTGGTAACATGGAATGCCATGATTACGGGATGTGCTAGAAGAGGACTAGCTAATGAGGCTAGAAATCTCTATCAGGAAATGATGGCAGATAAAGTGAAACCAGATGGGATTACAATGATTGGGATAATTTCTTCTTGTTCTCAACTGCAGGATTTGAATCTCGGCAGAAAATTTCATCTTTATGTCAAAGAACATGGCCTTGAGTTGACAATCCCACTCAGTAATGCACTTATGGACATGTATGTCAAGTGTGGAGACCTGCTGGCAGCACGAATTCTATTTGACAACATGGCACATAAGACCCTTGTTTCATGGACTACAATGATTTTGGGATATGCCAGATTTGGTTTTCTAGATGTTGCCCGGGAGCTTTTGTATAAAATTCCAGAAAACAGTATCGTGCCTTGGAATGCAATTATTGGTGGCTGTGTCCAAGCTAAGAATAGTAAAGAGGCATTGGCTCTGTTCCATGAAATGCAAATTAAGAAAATCAAACCTGATAAAGTTACTATGGTTAACTGTTTGTCTGCATGCTCACAACTAGGAGCACTTGATGTAGGAATATGGATTCATCATTATATTAAAAGGCATAGTATTTCTCTTGATGTTGTCTTGGGCACTGCACTAGTTGACATGTATGCCAAGTGTGGAAATATTGCAAGGGCTCTCGAGGTTTTCCAAGAGGTTCCTCAAAGAAATTGTTTGACCTGGACTGCCATTATTTGTGGTTTAGCACTTCATGGGAATGCCTGGGATGCTATATCCTATTTCTCAGAAATGATCCGTTGTGGCTTGAGACCTGATGAGATCACTTTTCTTGGTATCTTATCAGCTTGTTGTCATGGAGGTTTAGTTGAAGAAGGCCGAAAATATTTTTCCCAAATGAGCTTTAGTTTTAATATAACCCCTCAGCTTAAACACTACTCGTGCATGGTGGATCTTTTAGGAAGGGCTGGTTATTTGGAGGAAGCAGAAGAGCTTATTAGAAATATGCCGATAGTAGCAGATGCTGCAGTGTGGGGTGCTTTATTCTTTGCATGTCGAGTTCATGGTAATGTTTTAATAGGAGAAAGGGCAGCTTTGAAACTTCTTGAGATGGATCCTCAAGATAGTGGTATTTATGTTTTGCTTGCTACTATGTACAGTGAGGCAAAAATGTGGAAGGAGGCAAGGAACGCAAGGAATATAATGAAGGAGAGAGGAGTAGAAAAGACACCTGGTTGCAGCTCAATTGAAATCAATGGCATTGTGCAAGAGTTTTTGGCGAAGGATGTCTTACATCCACAGTCTGAATGGATTTATGAATGCCTGGTTTCATTGACAAAGCAACTGGAGTTTCTTGTATTTACATGTGACGTTCCTGCTTATGGAGATGAATTTTTTTCCTAA 2031 0.4032 MFILFVNKLRFRHPLKIPLLGLLCCLHTRSLSPFVKPINWNTSHSFVRNNPLLSLLERCQSLLQLKQIQAQMILTGLIDDSFAASRLVTFCALSESQALEYCTKILYWIREPNVFSWNVTIRGFVESGDLEGAVLLYKRMLQCGVKPDNHTCLFLLRACSFPSMNFVGYTVLGHVLKFGFEFDIFVHNASITMLLSYGELKAAYDVFNNGCARDLVTWNAMITGCARRGLANEARNLYQEMMADKVKPDGITMIGIISSCSQLQDLNLGRKFHLYVKEHGLELTIPLSNALMDMYVKCGDLLAARILFDNMAHKTLVSWTTMILGYARFGFLDVARELLYKIPENSIVPWNAIIGGCVQAKNSKEALALFHEMQIKKIKPDKVTMVNCLSACSQLGALDVGIWIHHYIKRHSISLDVVLGTALVDMYAKCGNIARALEVFQEVPQRNCLTWTAIICGLALHGNAWDAISYFSEMIRCGLRPDEITFLGILSACCHGGLVEEGRKYFSQMSFSFNITPQLKHYSCMVDLLGRAGYLEEAEELIRNMPIVADAAVWGALFFACRVHGNVLIGERAALKLLEMDPQDSGIYVLLATMYSEAKMWKEARNARNIMKERGVEKTPGCSSIEINGIVQEFLAKDVLHPQSEWIYECLVSLTKQLEFLVFTCDVPAYGDEFFS* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0851 676 Gene3D Tetratricopeptide repeat domain 271 398 IPR011990 GO:0005515
Pvu10g0851 676 Gene3D Tetratricopeptide repeat domain 50 163 IPR011990 GO:0005515
Pvu10g0851 676 Gene3D Tetratricopeptide repeat domain 169 270 IPR011990 GO:0005515
Pvu10g0851 676 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 37 663 - -
Pvu10g0851 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 147 IPR002885 -
Pvu10g0851 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
Pvu10g0851 676 Gene3D Tetratricopeptide repeat domain 513 647 IPR011990 GO:0005515
Pvu10g0851 676 Gene3D Tetratricopeptide repeat domain 399 512 IPR011990 GO:0005515
Pvu10g0851 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Pvu10g0851 676 Pfam E motif 564 626 IPR046848 -
Pvu10g0851 676 PANTHER OS10G0400250 PROTEIN 37 663 - -
Pvu10g0851 676 Pfam PPR repeat 521 545 IPR002885 -
Pvu10g0851 676 Pfam PPR repeat 289 311 IPR002885 -
Pvu10g0851 676 Pfam PPR repeat 317 345 IPR002885 -
Pvu10g0851 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Pvu10g0851 676 Pfam PPR repeat family 112 159 IPR002885 -
Pvu10g0851 676 Pfam PPR repeat family 214 260 IPR002885 -
Pvu10g0851 676 Pfam PPR repeat family 447 495 IPR002885 -
Pvu10g0851 676 Pfam PPR repeat family 347 392 IPR002885 -
Pvu10g0851 676 TIGRFAM PPR: pentatricopeptide repeat domain 216 249 IPR002885 -
Pvu10g0851 676 TIGRFAM PPR: pentatricopeptide repeat domain 116 148 IPR002885 -
Pvu10g0851 676 TIGRFAM PPR: pentatricopeptide repeat domain 450 483 IPR002885 -
Pvu10g0851 676 TIGRFAM PPR: pentatricopeptide repeat domain 350 381 IPR002885 -
Pvu10g0851 676 TIGRFAM PPR: pentatricopeptide repeat domain 485 511 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0851 Pvu-Chr10 30313677 30318230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0851 97 659 Glycoside Hydrolase AT3G49170 30.742 7.34e-86 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0851 - - var:108319674 1228