Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02090 ATGGCAGAAGAAGCTCACTCACAAGTTATAGACCAGGTTGTTCAAGAAGCCCTTGATAAAGCTTATATGACTGAGAAGGATCTCACTGCTGTTGCTGTTACCATTGGTCCTGGTTTAAGTCTCTGCCTACGTGTGGGGGTGCAGAAAGCTCGGAGAATTGCTGGGGGATTTAATTTACCAATTATTGGCATACATCACATGGAAGCTCATGCTCTTGTGGCAAGGTTAATTGAGAAAGATTTGCAGTTTCCATTCATGGCACTACTTATTTCAGGGGGACACAATTTACTCATTCTTGCACGTGATCTTGGGCAATACATACAACTTGGAACTACAATAGATGATGCTATTGGTGAGGCATATGACAAGACAGCAAAATGGCTTGGACTTGATATGAGGAGAAGTGGTGGTCCTGCTATAGAGAAGCTTGCTATGGAGGGTAATGCCGAATCTGTCAAGTTTTCTATTCCAATGAAGCAGCACAAAGACTGCAACTTCTCCTATGCTGGTCTTAAAAACCAAGTACGAATGGCAATTGAGTCCAAAAAGATTGATGCCAAAATTCCAATTTCTTCAGCAAGTAATGAAGATCGATTGTCACGAGCTGATATTGCTGCTTCTTTTCAGCGAATTGCTGTGTTACATCTTGAGGAAAAGTGCGAACGAGCAATACAGTGGGCATTGAAGATGGAGCCTTCTATAAGACACTTGGTTGTCTCTGGTGGTGTTGCATCAAATCAATATGTTCGGACCCGGCTTGATATGGTTGTGAAGAAGAATGGACTACAACTTGTATGCCCTCCTCCTCAGCTCTGTACTGATAACGGTGTAATGGTTGCTTGGACCGGTATTGAGCACTTCCGCATGGGAAGATATGACCCTCCTCCTCCTGCAGAAGAGCCAGAAGACTTTGTGTATGATTTACGCCCGAGGTGGCCGCTTGGGGAAGTATATGCTGAAGGAAAAAGTGAAGCACGTTCCTTAAGAACAGCCCGTATTCATCCTTCTCTTACATCTATAATTCAAGCATCATTGCAACAGTGA 1044 0.4358 MAEEAHSQVIDQVVQEALDKAYMTEKDLTAVAVTIGPGLSLCLRVGVQKARRIAGGFNLPIIGIHHMEAHALVARLIEKDLQFPFMALLISGGHNLLILARDLGQYIQLGTTIDDAIGEAYDKTAKWLGLDMRRSGGPAIEKLAMEGNAESVKFSIPMKQHKDCNFSYAGLKNQVRMAIESKKIDAKIPISSASNEDRLSRADIAASFQRIAVLHLEEKCERAIQWALKMEPSIRHLVVSGGVASNQYVRTRLDMVVKKNGLQLVCPPPQLCTDNGVMVAWTGIEHFRMGRYDPPPPAEEPEDFVYDLRPRWPLGEVYAEGKSEARSLRTARIHPSLTSIIQASLQQ 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02090 347 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 52 71 IPR017861 -
Cca01g02090 347 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 31 51 IPR017861 -
Cca01g02090 347 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 86 98 IPR017861 -
Cca01g02090 347 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 109 130 IPR017861 -
Cca01g02090 347 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 237 246 IPR017861 -
Cca01g02090 347 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE, MITOCHONDRIAL-RELATED 1 326 IPR022450 GO:0002949
Cca01g02090 347 Gene3D - 2 289 - -
Cca01g02090 347 Pfam tRNA N6-adenosine threonylcarbamoyltransferase 2 281 IPR000905 -
Cca01g02090 347 Gene3D - 84 267 - -
Cca01g02090 347 TIGRFAM gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 2 280 IPR017861 -
Cca01g02090 347 SUPERFAMILY Actin-like ATPase domain 5 281 IPR043129 -
Cca01g02090 347 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE 1 326 IPR000905 -
Cca01g02090 347 Hamap tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 2 314 IPR022450 GO:0002949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02090 K01409 - gmx:100784367 654.055