Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu10g01478 ATGTCACACATAGACAGTGCCCCTTCCACCCCAGGGAAGTTCAAGATGGAGAAAGCCTCGTACTTTAACCGCGTGCGGTGGCACACCTCGCTGGCGAAGCTCGCAGTGTGGTCCTTCGTGTTTTTGGGTGCGATCTTGATCTTCTTTTTCCGGTCGCCGGCGTCGTCGCCGATTCCGGCAGACCTCTCCCGGAGGTCACTGAGGACCTACAACTGGGGCGGACCCGTTTGGGAGAAACGGGTCCGAGCCTCTGCCCGGGTCCGGTCCCGAAATGGGTTTGCCGTTTTGGTCACAGGAGCTGCCGGCTTTGTCGGCACCCATGTTTCTGCGGCGCTGAAACGCCGCGGAGATGGGGTTCTGGGAATTGACAATTTCAATGACTATTACGACCCTTCACTAAAACGTGCACGCCAGTTGCTTTTGGAGCGCACTGGAGTGTACATAGTGGAGGGTGATATCAATGATGAAGCACTCTTGAGGAAGCTTTTTGAGGTTGTTCCTTTCACTCATGTTATGCACTTGGCTGCTCAGGCTGGTGTGAGGTATGCCATGGAGAATCCTGGCTCTTATGTGCATAGCAACATTGCTGGTTTTGTGAATTTGCTTGAGGTTTGTAAGAGTGTGAATCCGCAACCATCTATTGTGTGGGCGTCCAGTAGCTCAGTTTATGGACTTAACACTAAGGTTCCATTCTCTGAGAGGGATAGGACTGATCAGCCTGCTAGCTTGTATGCTGCCACCAAGAAGGCTGGTGAGGAGATTGCTCACACTTATAACCATATCTATGGTCTTTCATTGACTGGCTTGAGGTTCTTCACTGTTTATGGCCCTTGGGGTAGGCCTGATATGGCTTACTTCTTCTTCACTAGGGATATTTTGAAGGGGAAGGTGATACCTATATTTGAGGCTGCGAATCATGGCACGGTTGCAAGGGATTTTACTTACATTGATGATATTGTGAGGGGTTGTTTAGGGGCTCTGGATACGGCAGAAAAAAGCACGGGGAGTGGGGGCAAGAAGAGGGGGCCGGCACAGTTGAGGGTTTTCAATTTGGGGAATACTTCGCCGGTGCCGGTTAGTGAACTTGTGGGCATCTTGGAGAGGCTTCTGAAGGTTAAGGCAAATAGGAACATAATGAAGTTGCCGCGGAATGGTGATGTTCAGTTTACACATGCCAACATTAGCTACGCGCAGAGGGAGCTTGGGTATAAGCCAACCACAGATCTGAATAGTGGTTTGAAGAAATTTGTGCGGTGGTACCTGAATTACTATTCTGGTGGGAAGAAAGCTGTTGAGTGA 1299 0.5035 MSHIDSAPSTPGKFKMEKASYFNRVRWHTSLAKLAVWSFVFLGAILIFFFRSPASSPIPADLSRRSLRTYNWGGPVWEKRVRASARVRSRNGFAVLVTGAAGFVGTHVSAALKRRGDGVLGIDNFNDYYDPSLKRARQLLLERTGVYIVEGDINDEALLRKLFEVVPFTHVMHLAAQAGVRYAMENPGSYVHSNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTKVPFSERDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKVIPIFEAANHGTVARDFTYIDDIVRGCLGALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSELVGILERLLKVKANRNIMKLPRNGDVQFTHANISYAQRELGYKPTTDLNSGLKKFVRWYLNYYSGGKKAVE* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu10g01478 432 PANTHER EPIMERASE-RELATED 77 425 - -
Lapu10g01478 432 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 92 425 IPR036291 -
Lapu10g01478 432 PRINTS Nucleotide sugar epimerase signature 346 361 - -
Lapu10g01478 432 PRINTS Nucleotide sugar epimerase signature 386 403 - -
Lapu10g01478 432 PRINTS Nucleotide sugar epimerase signature 121 137 - -
Lapu10g01478 432 PRINTS Nucleotide sugar epimerase signature 311 326 - -
Lapu10g01478 432 Gene3D - 96 407 - -
Lapu10g01478 432 Pfam NAD dependent epimerase/dehydratase family 95 332 IPR001509 -
Lapu10g01478 432 FunFam UDP-glucuronate 4-epimerase 3 94 425 - -
Lapu10g01478 432 Gene3D - 272 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu10g01478 Lapu-Chr10 24702561 24704951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu10g01478 1 430 Miscellaneous Gene Families AT4G00110 86.744 0.0 774
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu10g01478 K08679 - gmx:100788739 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g01478 10 24702561 24704951 Lapu10g01478 10 24702561 24704951 ECH