Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi17g1073 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1074 Acco01g0509 . Accr1g00326 . . . Aed7g0378 . . . . . . . Alju02g3386 . . . Apr6g0907 . Arst5g02836 . Bach1g01363 . Bisa01g0502 . Bva04g00975 . . . Cca08g00404 . Dere06g1632 . . . Enph12g1056 . Glsi01g1845 . . . . Gma09g01553 . . . . Lal8g0507 Lal10g0910 . . . . Lan10g0491 Lan10g0491 . . . . Lapu4g00363 . Lasa1g02203 . Lele45g0347 Lele46g0376 Lele47g1047 Lele48g1111 . . . . Lja2g2328 . . Mal6g3534 Mepo7g00716 . Mesa22g02918 . Mibi01g3157 . . Mtr6g2011 . . . . Prci14g1884 . . . Pste9g01352 . Pte16g00244 . . . Pumo6g02844 . Pvu4g1475 . Rops5g00515 . Seca10g04528 . Spst4g02946 . . . . Sto10g2723 . Tpr2g5160 Trre11g01792 . . Tsu06g03524 Vian8g01298 . Vifa1g03669 . Vimu8g01762 . Viun4g00592 . Vivi2g05847 . Vra1g0788 .
Vvi17g1075 Acco01g0510 . Accr1g00327 . . . Aed7g0377 . . . . . . . Alju02g3385 . . . Apr6g0908 . Arst5g02837 . Bach1g01364 . Bisa01g0501 . Bva04g00974 . . . Cca08g00403 . Dere06g1634 . . . Enph12g1057 . Glsi01g1846 . . . . Gma09g01554 . . . . . Lal10g0911 Lal25g0517 . . . . . . . . . Lapu4g00362 . Lasa1g02202 . Lele45g0348 Lele46g0377 Lele47g1046 Lele48g1110 . . . . Lja2g2327 . . Mal6g3533 Mepo7g00717 . Mesa22g02916 . Mibi01g3156 . . Mtr6g2009 . . . . Prci14g1885 . . . Pste9g01353 . Pte16g00245 . . . Pumo6g02845 . Pvu4g1476 . Rops5g00514 . Seca10g04529 . . . . . . Sto10g2724 . Tpr2g5161 Trre11g01801 . . Tsu06g03526 Vian8g01299 . . . Vimu8g01760 . Viun4g00591 . Vivi2g05848 . Vra1g0787 .
Vvi17g1076 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1077 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1078 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1079 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1080 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1081 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g1082 Acco12g0026 . Accr10g01970 . Adu10g03051 . Aed7g0376 . . . . . . . Alju12g2063 . . . Apr6g0909 . . . . . Bisa01g0999 . Bva04g00973 . . . Cca08g00402 . Dere13g2077 . . . . . Glsi09g2074 . . . . Gma09g01555 . . . . Lal8g0506 Lal10g0912 Lal25g0516 . . . Lan10g0489 Lan10g0489 Lan10g0489 . . . Lapu2g01813 . . . . . . . . . . . Lja2g2326 . . Mal6g3532 Mepo4g01348 . Mesa1g01547 . Mibi10g2011 . . Mtr6g2008 . . . . Prci5g2458 . . . Pste1g03854 . . . . . Pumo8g00070 . Pvu3g0057 . Rops1g00381 . Seca10g05202 . Spst2g02211 . . . . Sto10g2725 . Tpr2g5162 Trre1g01455 . . Tsu06g03527 Vian10g01868 . Vifa3g03760 . Vimu11g00034 . Viun2g00103 . Vivi4g03962 . Vra1g0786 .
   
Previous Page 2453 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi17g1073 Chr17 14575746 14577071 +
Vvi Vvi17g1074 Chr17 14593613 14610429 +
Acco Acco01g0509 Chr01 6156510 6162471 +
Accr Accr1g00326 Chr1 6524607 6530431 +
Aed Aed7g0378 Chr7 2816788 2819823 -
Alju Alju02g3386 Chr02 51745813 51751576 -
Apr Apr6g0907 Chr6 13491860 13495917 +
Arst Arst5g02836 Chr5 83777162 83781705 +
Bach Bach1g01363 Chr1 27084191 27093793 +
Bisa Bisa01g0502 Chr01 7212461 7219475 -
Bva Bva04g00975 Chr04 6396721 6403644 -
Cca Cca08g00404 Chr08 6133163 6138501 -
Dere Dere06g1632 Chr06 30850241 30863770 +
Enph Enph12g1056 Chr12 17546159 17552567 +
Glsi Glsi01g1845 Chr01 82015899 82025988 +
Gma Gma09g01553 Chr09 40648103 40652765 +
Lal Lal8g0507 Chr8 3466639 3484480 -
Lal Lal10g0910 Chr10 16533738 16538453 +
Lan Lan10g0491 Chr10 3806169 3810339 -
Lan Lan10g0491 Chr10 3806169 3810339 -
Lapu Lapu4g00363 Chr4 3694174 3700019 -
Lasa Lasa1g02203 Chr1 245040523 245045173 -
Lele Lele45g0347 Chr45 2756215 2762786 +
Lele Lele46g0376 Chr46 2514528 2519047 +
Lele Lele47g1047 Chr47 16260618 16265252 -
Lele Lele48g1111 Chr48 15823578 15828108 -
Lja Lja2g2328 Chr2 27911820 27915440 -
Mal Mal6g3534 Chr6 104222969 104227541 -
Mepo Mepo7g00716 Chr7 11550221 11555554 +
Mesa Mesa22g02918 Chr22 77368464 77372532 -
Mibi Mibi01g3157 Chr01 55555021 55561431 -
Mtr Mtr6g2011 Chr6 36567367 36572476 -
Prci Prci14g1884 Chr14 26418534 26425693 +
Pste Pste9g01352 Chr9 12270336 12275373 +
Pte Pte16g00244 Chr16 2983229 2988501 +
Pumo Pumo6g02844 Chr6 68008941 68017905 +
Pvu Pvu4g1475 Chr4 41805167 41810053 +
Rops Rops5g00515 Chr5 8651627 8656613 -
Seca Seca10g04528 Chr10 103415344 103422214 +
Spst Spst4g02946 Chr4 69076728 69087520 -
Sto Sto10g2723 Chr10 37436548 37441548 +
Tpr Tpr2g5160 Chr2 57693710 57698222 +
Trre Trre11g01792 Chr11 17476982 17481277 +
Tsu Tsu06g03524 Chr06 46368784 46373322 +
Vian Vian8g01298 Chr8 31911117 31914647 +
Vifa Vifa1g03669 Chr1 567584859 567589008 -
Vimu Vimu8g01762 Chr8 23518706 23522845 -
Viun Viun4g00592 Chr4 3856504 3860625 -
Vivi Vivi2g05847 Chr2 188368786 188373383 +
Vra Vra1g0788 Chr1 9334575 9339116 -
Vvi Vvi17g1075 Chr17 14645447 14654522 +
Acco Acco01g0510 Chr01 6165023 6169762 +
Accr Accr1g00327 Chr1 6541608 6546027 +
Aed Aed7g0377 Chr7 2809395 2816326 -
Alju Alju02g3385 Chr02 51739216 51743798 -
Apr Apr6g0908 Chr6 13497592 13504162 +
Arst Arst5g02837 Chr5 83783362 83788980 +
Bach Bach1g01364 Chr1 27097670 27102689 +
Bisa Bisa01g0501 Chr01 7198090 7203594 -
Bva Bva04g00974 Chr04 6390607 6396004 -
Cca Cca08g00403 Chr08 6125557 6132023 -
Dere Dere06g1634 Chr06 30865153 30871282 +
Enph Enph12g1057 Chr12 17554499 17560315 +
Glsi Glsi01g1846 Chr01 82026117 82033751 +
Gma Gma09g01554 Chr09 40654484 40661418 +
Lal Lal10g0911 Chr10 16539747 16545119 +
Lal Lal25g0517 Chr25 3686014 3692709 -
Lapu Lapu4g00362 Chr4 3686432 3692468 -
Lasa Lasa1g02202 Chr1 244820150 244825686 -
Lele Lele45g0348 Chr45 2762837 2766835 +
Lele Lele46g0377 Chr46 2520641 2524451 +
Lele Lele47g1046 Chr47 16255460 16259461 -
Lele Lele48g1110 Chr48 15818667 15822442 -
Lja Lja2g2327 Chr2 27897300 27903247 -
Mal Mal6g3533 Chr6 104210323 104217608 -
Mepo Mepo7g00717 Chr7 11563456 11569656 +
Mesa Mesa22g02916 Chr22 77319288 77324758 -
Mibi Mibi01g3156 Chr01 55548590 55553235 -
Mtr Mtr6g2009 Chr6 36542718 36548886 -
Prci Prci14g1885 Chr14 26428854 26434006 +
Pste Pste9g01353 Chr9 12279445 12286630 +
Pte Pte16g00245 Chr16 2991148 2996271 +
Pumo Pumo6g02845 Chr6 68019556 68026082 +
Pvu Pvu4g1476 Chr4 41811712 41817659 +
Rops Rops5g00514 Chr5 8640952 8646753 -
Seca Seca10g04529 Chr10 103425466 103432095 +
Sto Sto10g2724 Chr10 37443081 37448530 +
Tpr Tpr2g5161 Chr2 57717102 57722534 +
Trre Trre11g01801 Chr11 17553969 17559004 +
Tsu Tsu06g03526 Chr06 46403317 46407073 +
Vian Vian8g01299 Chr8 31920641 31925717 +
Vimu Vimu8g01760 Chr8 23510946 23516513 -
Viun Viun4g00591 Chr4 3847338 3853047 -
Vivi Vivi2g05848 Chr2 188388354 188393652 +
Vra Vra1g0787 Chr1 9326957 9332702 -
Vvi Vvi17g1076 Chr17 14668218 14668355 -
Vvi Vvi17g1077 Chr17 14669136 14669465 -
Vvi Vvi17g1078 Chr17 14671296 14671802 +
Vvi Vvi17g1079 Chr17 14688877 14689457 -
Vvi Vvi17g1080 Chr17 14694662 14695237 -
Vvi Vvi17g1081 Chr17 14696272 14700193 -
Vvi Vvi17g1082 Chr17 14702777 14720689 -
Acco Acco12g0026 Chr12 347529 349855 +
Accr Accr10g01970 Chr10 44178699 44181111 -
Adu Adu10g03051 Chr10 106530330 106532022 +
Aed Aed7g0376 Chr7 2797561 2801439 +
Alju Alju12g2063 Chr12 41452451 41455255 -
Apr Apr6g0909 Chr6 13504072 13507360 -
Bisa Bisa01g0999 Chr01 16860438 16862847 +
Bva Bva04g00973 Chr04 6386848 6389557 +
Cca Cca08g00402 Chr08 6121205 6124566 +
Dere Dere13g2077 Chr13 27941614 27944652 -
Glsi Glsi09g2074 Chr09 44220794 44224290 +
Gma Gma09g01555 Chr09 40662780 40666104 -
Lal Lal8g0506 Chr8 3462959 3466229 +
Lal Lal10g0912 Chr10 16542889 16548998 -
Lal Lal25g0516 Chr25 3680588 3683808 +
Lan Lan10g0489 Chr10 3794925 3798055 +
Lan Lan10g0489 Chr10 3794925 3798055 +
Lan Lan10g0489 Chr10 3794925 3798055 +
Lapu Lapu2g01813 Chr2 31796320 31800617 +
Lja Lja2g2326 Chr2 27893490 27896670 +
Mal Mal6g3532 Chr6 104204998 104207684 +
Mepo Mepo4g01348 Chr4 17760834 17765026 +
Mesa Mesa1g01547 Chr1 22469076 22472423 +
Mibi Mibi10g2011 Chr10 43252541 43254984 -
Mtr Mtr6g2008 Chr6 36537512 36541157 +
Prci Prci5g2458 Chr5 41096483 41099794 -
Pste Pste1g03854 Chr1 19395845 19400619 +
Pumo Pumo8g00070 Chr8 1957210 1961220 -
Pvu Pvu3g0057 Chr3 512675 516464 -
Rops Rops1g00381 Chr1 10481636 10485155 +
Seca Seca10g05202 Chr10 119031024 119035323 -
Spst Spst2g02211 Chr2 21298033 21300932 +
Sto Sto10g2725 Chr10 37454733 37457305 -
Tpr Tpr2g5162 Chr2 57725055 57728792 -
Trre Trre1g01455 Chr1 11040412 11042905 +
Tsu Tsu06g03527 Chr06 46411815 46415558 -
Vian Vian10g01868 Chr10 30649771 30658419 +
Vifa Vifa3g03760 Chr3 1101265402 1101267844 -
Vimu Vimu11g00034 Chr11 326779 330261 -
Viun Viun2g00103 Chr2 2276318 2280259 +
Vivi Vivi4g03962 Chr4 160459765 160462486 +
Vra Vra1g0786 Chr1 9322526 9325398 +