LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi17g1074	ATGTTGACGAAGATGGCTCGCCGAGCCGCCGCCCAGCAGCTGATCGACTCGATCGCGTCGAAGCTCAGCTCCGCCACCGCTTCTTCGGCTCAGACTCGGGGTTTTGCGGCGGCTGCGCATCCTCCGCCGGCGGTGTTCGTGGACAAGAACACTAGGGTGATTTGCCAAGGCATCACAGGCAAGAACGGCACGTTCCACACTGAGCAAGCCATCGAATATGGCACCAAAATGGTAGGTGGTGTAACACCAAAGAAGGGTGGGACAGAACACTTGGGACTTCCTGTTTTCAACACTGTTGCAGAGGCAAAGGCTGAAACAAAGGCTAATACATCTGTAATTTACGTGCCCCCACCTTTTGCTGCTGCAGCTATTATGGAGGCAATGGAAGCTGAGTTGGATCTTGTTGTATGCATCACAGAGGGCATCCCTCAGCATGACATGGTAAAGGTGAAGGCTGCTCTGAACAGGCAAACAAAAACTCGGCTGATTGGGCCAAACTGTCCTGGAATTATCAAGCCTGGAGAATGTAAAATTGGGATCATGCCTGGGTACATTCACAAACCAGGCCGTGTAGGAATTGTTTCCCGATCTGGTACCTTGACATATGAAGCGGTTTTCCAAACAACCGCAGTCGGCCTTGGACAGTCCACCAGTGTAGGCATAGGGGGGGATCCTTTTAATGGGACAAACTTCGTTGATTGCATTAAGAAGTTCCTAGTTGATCCTCAGACAGAAGGTATTGTTCTTATAGGAGAGATTGGTGGTACTGCTGAAGAGGATGCTGCTCAGTTAATAAAGGAAAGCAAGACTGAGAAGCCTATTGTTGCATTTATTGCTGGCCTAACTGCTCCCCCTGGTCGTCGTATGGGTCATGCTGGAGCCATTGTATCAGGTGGGAAGGGCACAGCCCAAGACAAAATCAAGACCCTCAGGGAAGCTGGTGTTACAGTGGTAGAATCTCCTGCAAAAATGGGTGTTGCCATGCTTGAAGCCTTCAAGCAAAAGGGTCTCATTCCGGCCTAA	1023	0.5044	MLTKMARRAAAQQLIDSIASKLSSATASSAQTRGFAAAAHPPPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANTSVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVKVKAALNRQTKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLGQSTSVGIGGDPFNGTNFVDCIKKFLVDPQTEGIVLIGEIGGTAEEDAAQLIKESKTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKMGVAMLEAFKQKGLIPA*	341

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi17g1074	340	Pfam	CoA binding domain	48	141	IPR003781	-
	Vvi17g1074	340	NCBIfam	succinate--CoA ligase subunit alpha	46	329	IPR005810	GO:0003824
	Vvi17g1074	340	Gene3D	-	164	337	IPR016102	-
	Vvi17g1074	340	Gene3D	-	44	163	-	-
	Vvi17g1074	340	ProSitePatterns	ATP-citrate lyase / succinyl-CoA ligases family active site.	280	293	IPR017440	-
	Vvi17g1074	340	PANTHER	SUCCINYL-COA LIGASE SUBUNIT ALPHA	25	337	-	-
	Vvi17g1074	340	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	44	165	IPR036291	-
	Vvi17g1074	340	SMART	CoA_binding_2	46	142	IPR003781	-
	Vvi17g1074	340	FunFam	Succinate--CoA ligase [ADP-forming] subunit alpha	43	163	-	-
	Vvi17g1074	340	Pfam	CoA-ligase	194	315	IPR005811	GO:0003824
	Vvi17g1074	340	SUPERFAMILY	Succinyl-CoA synthetase domains	166	333	IPR016102	-
	Vvi17g1074	340	FunFam	Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial	164	337	-	-
	Vvi17g1074	340	PIRSF	SucCS_alpha	42	335	IPR005810	GO:0003824
	Vvi17g1074	340	PRINTS	Succinyl-CoA synthase signature	251	264	-	-
	Vvi17g1074	340	PRINTS	Succinyl-CoA synthase signature	220	238	-	-
	Vvi17g1074	340	PRINTS	Succinyl-CoA synthase signature	284	301	-	-
	Vvi17g1074	340	PRINTS	Succinyl-CoA synthase signature	124	141	-	-
	Vvi17g1074	340	ProSitePatterns	ATP-citrate lyase / succinyl-CoA ligases family signature 1.	195	224	IPR033847	-
	Vvi17g1074	340	Hamap	Succinate--CoA ligase [ADP-forming] subunit alpha [sucD].	43	332	IPR005810	GO:0003824

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi17g1074	Vvi-Chr17	14593613	14610429	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi17g1074	132	334	Acyl Lipid Metabolism Gene Families	AT3G06650	34.579	9.42e-25	103

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi17g1074	K01899		-	vvi:100261494	635.18