Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01792 ATGGGTTTCCACCGCGTAACAAAACTCTTCTCAACAATCGCATCACGCCGCCAACATCTCCGTCACCTATCATCAACTCCGTCATCACCGGCGGTGTTCGTCGACAAAAGCACACGCGTGATCTGTCAAGGAATTACCGGAAAGAACGGAACGTTTCATACCGAACAAGCGATTGAATATGGAACGAATATGGTTGGTGGTGTTACTCCTAAGAAAGGTGGAACTGAACATTTAGGGCTTCCTGTTTTCAATTCTGTTGCTGAAGCTAAAGCTGAAACTAAAGCCAATGCTTCTGTTATTTATGTTCCTCCTCCTTTTGCTGCTGCTGCTATTATGGAAGCGTTGGAGGCTGAATTGGATCTTGTTGTTTGTATTACTGAAGGGATTCCTCAACATGATATGGTGCGTGTTAAAGCAGCAATTAACAGACAGTCCAAAACTCGTTTGATAGGACCAAACTGCCCTGGTATCATCAAGCCTGGGGAATGTAAAATTGGAATCATGCCAGGTTACATTCACAAACCTGGGCGCATAGGAATTGTTTCTCGTTCTGGCACTTTGACATATGAAGCGGTTTACCAAACAACCGCTGTTGGCCTTGGACAATCTACTTGTGTGGGTATTGGAGGAGATCCCTTCAATGGAACAAACTTTGTTGATTGCCTTACGAAGTTCATTGCGGATCCTCAAACCGAAGGTATCATTCTCATAGGAGAAATAGGAGGAACTGCAGAAGAGGATGCTGCTGCACTAATTAAGGAAAGTGGGACTGAGAAGCCCGTTGTTGCATTTATTGCCGGATTAACTGCTCCCCCTGGCCGTCGTATGGGTCATGCTGGAGCTATTGTGTCGGGTGGCAAGGGTACTGCTCAAGGCAAAATCAGCACCCTCAGGGAAGCTGGAGTCACAGTTGTGGAGTCCCCTGCTAAAATTGGAGCTGCCATGTTTGATATTTTCAAGCAGAAGGGCTTAGTCCAATAG 981 0.4597 MGFHRVTKLFSTIASRRQHLRHLSSTPSSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEALEAELDLVVCITEGIPQHDMVRVKAAINRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVYQTTAVGLGQSTCVGIGGDPFNGTNFVDCLTKFIADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQGKISTLREAGVTVVESPAKIGAAMFDIFKQKGLVQ 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01792 326 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 13 324 - -
Trre11g01792 326 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial 151 324 - -
Trre11g01792 326 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 30 319 IPR005810 GO:0003824
Trre11g01792 326 Pfam CoA binding domain 35 128 IPR003781 -
Trre11g01792 326 SMART CoA_binding_2 33 129 IPR003781 -
Trre11g01792 326 Gene3D - 151 324 IPR016102 -
Trre11g01792 326 Pfam CoA-ligase 181 302 IPR005811 GO:0003824
Trre11g01792 326 PIRSF SucCS_alpha 28 322 IPR005810 GO:0003824
Trre11g01792 326 PRINTS Succinyl-CoA synthase signature 271 288 - -
Trre11g01792 326 PRINTS Succinyl-CoA synthase signature 207 225 - -
Trre11g01792 326 PRINTS Succinyl-CoA synthase signature 111 128 - -
Trre11g01792 326 PRINTS Succinyl-CoA synthase signature 238 251 - -
Trre11g01792 326 Gene3D - 31 150 - -
Trre11g01792 326 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha 29 150 - -
Trre11g01792 326 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 182 211 IPR033847 -
Trre11g01792 326 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 267 280 IPR017440 -
Trre11g01792 326 NCBIfam succinate--CoA ligase subunit alpha 33 318 IPR005810 GO:0003824
Trre11g01792 326 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 30 152 IPR036291 -
Trre11g01792 326 SUPERFAMILY Succinyl-CoA synthetase domains 153 317 IPR016102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01792 Trre-Chr11 17476982 17481277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01792 119 321 Acyl Lipid Metabolism Gene Families AT3G06650 31.776 2.09e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01792 K01899 - gmx:100815484 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01792 11 17476982 17481277 Trre11g01792 11 17476982 17481277 ECH