Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1078 ATGATGGCCAAATGTGACCCACGCCATGTCAGGTACGTGGCATGCTGCCTGATGTACCGAGGTGATGTGGTGCCCAAGGACGTGAATGTAGATGTAGCCACCATCAAGACAAGGCGCATTATCCAGTTTGTTGATTGGTGCCCCACTGGATTCAAGAGCAGCATCAGCTACCAGCCACCAACTGTTGTCCCAGGGGTGGACCTTCCTTTGCATGCGAAAAATACATTAAGTGGCCAAGAATCCTTACAAATGCAGTACCTCAGGTGCCCCAACAGCGTTTTGGGTTTACCAAACAGCAACTATATGTTCTTAAGGCACAAATACTCGCATTTCAACCTTTTTCAACTCGAGAAGGAGCTCCTGAATGGGATTTCGAGTGTGATGGAATATGAGCATTGTGAAATAGCGTCAGTTCGTGTGCTGCAAGTGCATGAAGCATCATGTGAACCACGGGATACCCTGTTCTGCAGCAGCCTCCTCTTCCAGCTACACATATCAACTCCATGA 507 0.4832 MMAKCDPRHVRYVACCLMYRGDVVPKDVNVDVATIKTRRIIQFVDWCPTGFKSSISYQPPTVVPGVDLPLHAKNTLSGQESLQMQYLRCPNSVLGLPNSNYMFLRHKYSHFNLFQLEKELLNGISSVMEYEHCEIASVRVLQVHEASCEPRDTLFCSSLLFQLHISTP* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1078 168 PANTHER TUBULIN 1 83 IPR000217 GO:0005874|GO:0007017
Vvi17g1078 168 Gene3D - 1 77 IPR037103 -
Vvi17g1078 168 Pfam Tubulin C-terminal domain 1 66 IPR018316 -
Vvi17g1078 168 SUPERFAMILY Tubulin C-terminal domain-like 1 69 IPR008280 -
Vvi17g1078 168 PRINTS Alpha-tubulin signature 60 79 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi17g1078 168 PRINTS Alpha-tubulin signature 21 42 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vvi17g1078 168 PRINTS Alpha-tubulin signature 47 60 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1078 Vvi-Chr17 14671296 14671802 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1078 K07374 - vvi:104882437 349.362