LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops5g00515	ATGGCTTTGCAAAAGTTCATTTCCTCAATCGCATCGCGCCGCCACTGTCTCCGCCGTCTCTCATCGGCGGCGTCATCAGCGGCGGTGTTCGTTGACAAGAGCACCCGCGTGATCTGCCAAGGAATTACTGGTAAAAACGGCACGTTCCACACCGAACAAGCAATCGAATATGGAACCAACATGGTTGGTGGTGTTACTCCTAAGAAAGGTGGAACTGAACATTTAGGGCTTCCTGTTTTCAACACCGTCGCTGAAGCCAAAGCTGAAACCAAAGCTAATGCTTCTGTTATTTATGTTCCTCCGCCGTTTGCCGCTGCTGCTATTATGGAAGCGATGGAGGCTGAATTGGATCTCGTTGTTTGTATCACTGAAGGGATTCCACAACATGACATGGTACGAGTTAAAGCAGCACTAAACAGGCAGTCCAAAACTCGCCTGATAGGACCAAACTGCCCTGGCATCATCAAGCCCGGGGAATGTAAAATCGGAATCATGCCGGGTTACATTCATAAACCTGGCCGTGTAGGAATTGTGTCTCGTTCTGGTACTTTGACATATGAAGCGGTTTTCCAAACAACTGCTGTTGGCCTTGGACAATCCACTTGTGTGGGTATTGGAGGAGATCCCTTTAATGGAACAAACTTCGTTGATTGCCTTCAAAAGTTCCTACCAGATCCTCAGACAGAAGGTATCATTCTTATCGGAGAGATAGGAGGAACTGCAGAAGAGGATGCTGCTGCACTAATTAAGGAAAGCGGAACAGAGAAGCCTATAGTTGCTTTTATTGCTGGATTAACTGCTCCCCCTGGCCGTCGTATGGGTCATGCAGGAGCTATTGTGTCGGGTGGCAAGGGCACTGCACAAGACAAAATTAAAACCCTCAGGGAAGCTGGGGTTACAGTTGTGGAGTCCCCTGCTAAAATTGGAGCTGCCATGCTAGATGTTTTCAAGCAAAGGGGCTTGGTGCAATAG	972	0.4825	MALQKFISSIASRRHCLRRLSSAASSAAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLQKFLPDPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLDVFKQRGLVQ*	324

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops5g00515	323	PRINTS	Succinyl-CoA synthase signature	235	248	-	-
	Rops5g00515	323	PRINTS	Succinyl-CoA synthase signature	268	285	-	-
	Rops5g00515	323	PRINTS	Succinyl-CoA synthase signature	204	222	-	-
	Rops5g00515	323	PRINTS	Succinyl-CoA synthase signature	108	125	-	-
	Rops5g00515	323	Gene3D	-	28	147	-	-
	Rops5g00515	323	Pfam	CoA binding domain	32	125	IPR003781	-
	Rops5g00515	323	Gene3D	-	148	321	IPR016102	-
	Rops5g00515	323	SMART	CoA_binding_2	30	126	IPR003781	-
	Rops5g00515	323	NCBIfam	succinate--CoA ligase subunit alpha	30	315	IPR005810	GO:0003824
	Rops5g00515	323	PIRSF	SucCS_alpha	24	319	IPR005810	GO:0003824
	Rops5g00515	323	PANTHER	SUCCINYL-COA LIGASE SUBUNIT ALPHA	8	321	-	-
	Rops5g00515	323	Hamap	Succinate--CoA ligase [ADP-forming] subunit alpha [sucD].	27	316	IPR005810	GO:0003824
	Rops5g00515	323	FunFam	Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial	148	321	-	-
	Rops5g00515	323	FunFam	Succinate--CoA ligase [ADP-forming] subunit alpha	26	147	-	-
	Rops5g00515	323	Pfam	CoA-ligase	178	299	IPR005811	GO:0003824
	Rops5g00515	323	SUPERFAMILY	Succinyl-CoA synthetase domains	150	318	IPR016102	-
	Rops5g00515	323	ProSitePatterns	ATP-citrate lyase / succinyl-CoA ligases family signature 1.	179	208	IPR033847	-
	Rops5g00515	323	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	27	149	IPR036291	-
	Rops5g00515	323	ProSitePatterns	ATP-citrate lyase / succinyl-CoA ligases family active site.	264	277	IPR017440	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops5g00515	116	318	Acyl Lipid Metabolism Gene Families	AT3G06650	31.776	2.40e-22	95.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops5g00515	K01899		-	gmx:100815484	571.622

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops5g00515	5	8651627	8656613	Rops5g00515	5	8651627	8656613	ECH