LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele45g0347	ATGATTGTGTACACAATAATGATAACAAGTCAAAAGAAGAATGTGGGTGGTGTAACCCCAAAGAAGGGTGGAACTGAACACTTGGGACTTCCTGTGTTTAACACTGTTGCTGAAGCAAAAGCTGAAACAAATGCAAATGCTTCAGTCATCTATGTTCCTCCACCATTTGCTGCAGCTGCCATTTTGGAGGCAGTGGAAGCTGAGTTGGATCTTGTTGTCTGTATCACTGAAGGGATTCCTCAGCATGATATGTTACGAGTGAAAGCTGCTCTTAATAGACAGTCCAAGACTCGTCTGATTGGACCAAACTGCCCTGGTATCATCAAGCCAGGTGAATGTAAAATTGGAATCATGCCAGGTTACATTCATAAACCTGGTCGTGTAGGAATTGTTTCTCGTTCTGGCACCTTGACATATGAAGCGGTTTTCCAAACGACTGCTGTTGGACTTGGACAATCCACTTGTGTGGGCATAGGTGGAGATCCTTTTAATGGAACAAACTTTGTTGATTGTGTGGAGCGATTCCTGGTAGATCCACAGACTGATGGCATCATTCTCATAGGAGAGATAGGGGGAAATGCAGAAGAAGATGCTGCTGCACTAATTAAGGAAAGTGGGACTGAGAAGCCTATTGTTTCATTTATTGCTGGATTAACGGCTCCCCCTGGCCGTCGTATGGGTCATGCTGGAGATTATACCAATTGGACCTTCTCAATTTTGTTTGATTTTGCTGGTGCAGCCATTGTGTCAGGTGGCAAGGGTACTGCTCAGGACAAAATTAAGACTCTGAGGGAAGCTGGGGTCACCGTAGTGGAGTCACCTGCTAAAATTAGAGCTGCCATTCTTGATGTTTTCAAGCAGAGGGGCTTGTTAAATCTAGGGTTTTGCGCCACTGGTCTACATCCACAACCCATCTCACTGTTGACTCACCATTTTCCTGAGAAAATGTTCATGGAAAATCCTGCACGGTAA	972	0.4465	MIVYTIMITSQKKNVGGVTPKKGGTEHLGLPVFNTVAEAKAETNANASVIYVPPPFAAAAILEAVEAELDLVVCITEGIPQHDMLRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVERFLVDPQTDGIILIGEIGGNAEEDAAALIKESGTEKPIVSFIAGLTAPPGRRMGHAGDYTNWTFSILFDFAGAAIVSGGKGTAQDKIKTLREAGVTVVESPAKIRAAILDVFKQRGLLNLGFCATGLHPQPISLLTHHFPEKMFMENPAR	323

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele45g0347	323	TIGRFAM	sucCoAalpha: succinate-CoA ligase, alpha subunit	7	284	IPR005810	GO:0003824
	Lele45g0347	323	Hamap	Succinate--CoA ligase [ADP-forming] subunit alpha [sucD].	4	285	IPR005810	GO:0003824
	Lele45g0347	323	PANTHER	SUCCINYL-COA LIGASE SUBUNIT ALPHA	7	291	-	-
	Lele45g0347	323	FunFam	Succinate--CoA ligase [ADP-forming] subunit alpha	101	288	-	-
	Lele45g0347	323	Pfam	CoA binding domain	11	78	IPR003781	-
	Lele45g0347	323	SUPERFAMILY	Succinyl-CoA synthetase domains	103	286	IPR016102	-
	Lele45g0347	323	Pfam	CoA-ligase	131	234	IPR005811	GO:0003824
	Lele45g0347	323	PRINTS	Succinyl-CoA synthase signature	188	201	-	-
	Lele45g0347	323	PRINTS	Succinyl-CoA synthase signature	61	78	-	-
	Lele45g0347	323	PRINTS	Succinyl-CoA synthase signature	157	175	-	-
	Lele45g0347	323	PRINTS	Succinyl-CoA synthase signature	221	238	-	-
	Lele45g0347	323	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	3	102	IPR036291	-
	Lele45g0347	323	PIRSF	SucCS_alpha	2	288	IPR005810	GO:0003824
	Lele45g0347	323	SMART	CoA_binding_2	2	79	IPR003781	-
	Lele45g0347	323	ProSitePatterns	ATP-citrate lyase / succinyl-CoA ligases family active site.	217	230	IPR017440	-
	Lele45g0347	323	Gene3D	-	101	290	IPR016102	-
	Lele45g0347	323	ProSitePatterns	ATP-citrate lyase / succinyl-CoA ligases family signature 1.	132	161	IPR033847	-
	Lele45g0347	323	Gene3D	-	1	100	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele45g0347	Lele-ChrLele45	2756215	2762786	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele45g0347	69	287	Acyl Lipid Metabolism Gene Families	AT3G06650	31.140	4.35e-20	89.0

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele45g0347	45	2756215	2762786	Lele45g0347	45	2756215	2762786	ECH
	Lele45g0347	45	2756215	2762786	Lele47g1047	47	16260618	16265252	hybridization
	Lele45g0347	45	2756215	2762786	Lele48g1111	48	15823578	15828108	hybridization