Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1632 ATGTTTGCACCGAACAAGCACGCAAGGGAGTGTGAAAAGTTGAACAGCACACCAGGGTGGACGATGGGTCGCCAAGCTGTAGCGAAGTTGATCGGCTCGATTGCATCATGCGCCAAAGGATCTTCATCGTCGTCATTTCCTTCTTCTTCCTCTCAGATCCGCCATTTCACATCGGCGCCACCCTCTCCTGCCGTTTTCGTTGACAAGAACACGCGCGTCATCTGCCAAGGCATCACCGGCAAGAATGGCACTTTCCACGCGGAACAAGCCATCGAATACGGCACCAAGATGGTGGGTGGTGTAACACCAAAGAAAGGTGGAACTGAACACTTGGGACTTCCTGTGTTCAACACTGTCGCTGAAGCAAAGGCTGAAACAAAGGCAAATGCATCAGTCATCTATGTTCCTCCACCATTTGCTGCAGCTGCCATTATGGAGGCAATGGAAGCTGAGTTGGATCTTGTTGTCTGTATCACTGAAGGGATTCCTCAGCATGATATGGTACGAGTGAAAGCTGCTCTTAACAGACAGTCCAGAACTCGTCTCATCGGACCAAACTGCCCTGGTATCATCAAGCCTGGTGAATGTAAAATTGGAATCATGCCAGGTTACATTCATAAACCTGGCTGTATAGGAATTGTTTCTCGTTCTGGTACCTTGACGTATGAAGCGGTTTTCCAAACCACTGCTGTTGGACTAGGACAATCCACTTGTGTAGGCATAGGGGGAGATCCTTTTAATGGAACAAACTTCGTTGATTGCATGGAGCGATTCCTAGCAGATCCTCAGACAGAAGGTATCATTCTCATTGGAGAAATAGGGGGAACCGCAGAAGAGGATGCTGCTGCACTAATTAAGGAAAGTGGGACAGAGAAGCCTATCGTTGCATTTATTGCTGGATTAACTGCACCCCCTGGCCGTCGTATGGGTCATGCTGGAGCGATTGTGTCTGGCGGCAAGGGTACTGCACAGGACAAGATTAAGACCCTCAGGGAAGCTGGGGTCACAGTAGTGGAGTCCCCAGCTAAAATTGGAGCTGCTATGCTAGATGTTTTCAAGCAGAGGGGCTTGGTGCAATAG 1080 0.4926 MFAPNKHARECEKLNSTPGWTMGRQAVAKLIGSIASCAKGSSSSSFPSSSSQIRHFTSAPPSPAVFVDKNTRVICQGITGKNGTFHAEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSRTRLIGPNCPGIIKPGECKIGIMPGYIHKPGCIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCMERFLADPQTEGIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLDVFKQRGLVQ 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1632 359 Pfam CoA-ligase 214 335 IPR005811 GO:0003824
Dere06g1632 359 Gene3D - 64 183 - -
Dere06g1632 359 SMART CoA_binding_2 66 162 IPR003781 -
Dere06g1632 359 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 300 313 IPR017440 -
Dere06g1632 359 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 64 185 IPR036291 -
Dere06g1632 359 NCBIfam succinate--CoA ligase subunit alpha 66 351 IPR005810 GO:0003824
Dere06g1632 359 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha 62 183 - -
Dere06g1632 359 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 56 357 - -
Dere06g1632 359 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 63 352 IPR005810 GO:0003824
Dere06g1632 359 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 215 244 IPR033847 -
Dere06g1632 359 Gene3D - 184 357 IPR016102 -
Dere06g1632 359 SUPERFAMILY Succinyl-CoA synthetase domains 186 354 IPR016102 -
Dere06g1632 359 PRINTS Succinyl-CoA synthase signature 240 258 - -
Dere06g1632 359 PRINTS Succinyl-CoA synthase signature 144 161 - -
Dere06g1632 359 PRINTS Succinyl-CoA synthase signature 304 321 - -
Dere06g1632 359 PRINTS Succinyl-CoA synthase signature 271 284 - -
Dere06g1632 359 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial 184 357 - -
Dere06g1632 359 Pfam CoA binding domain 68 161 IPR003781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1632 Dere-ChrDere06 30850241 30863770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1632 152 354 Acyl Lipid Metabolism Gene Families AT3G06650 31.776 3.04e-22 96.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere06g1632 06 30850241 30863770 Dere06g1632 06 30850241 30863770 ECH