Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0912 ATGTCACCGTCAAACGTGTTGCAGAGCAACGGCGGCGGTGGCGGCGGTAATGGGTTGAATTATATTGAGCATCAGGTTTCAAAGCTTGATACTCTTGCTGGTGTGGCCATCAAGTATGGTGTTGAGGTAGCTGACATCAAAAGGATGAATGGATTAGCCTCCGATCTTCAAATGTTTGCTGTGAAGACATTGAGAATTCCATTGCCAGGACGACATCCACCATCTCGGATTCCTAGTCTGCCTAACGGACATGCCAAACAAGGGAACTCTTTTTTAATTGAAACTTGTTGCAGAGATGATAGCTTTGTAAGGAGATCCCCACCTAGAAGTAAATCTGGCATGAAGGAACCTTTTCAGTCCTCAAGACTAAAAGCACCTAAACAGGAGCTTTCTCCAGCTATGACCATTTTACAGAAATACTATGGACTCAGATCTTTGAAGTCTACAGATACATTTGAAGGAACAGAAATGGCAGCTTATACATCTGTAAGTTCAGATCATTCTAGTGATGAATGGCTTCCAAAAGCCTCACCAATTTTGGACTTTCAGTCAGATAACTACCCCAAGTCAACAAATCTAGTGTATGATCTACTGACTGGGAACAATGAAGTGCCCGAGTATGTGCCTCTTTCAGAAATTGGCGATGTAGGAGGTGAGAAGTCTGATGAGAAGTCTGTTCGTAGACGTCAGAAAGCTGAAGTTGATGGTGGAGATGGTTCACCTGAAAGGATTTTGAAAGAAGGAAATAGTAGTGGCAGTTCAAATGGCTTTTCTTCAACTGGAAAACCATTATCCGGGAGGACAAAATCAGCGAGTCGAGCAGTGCTGTTTCCTGAATCAGAATCAGGATGGTTAGATTCTATTGCAGTGGGGTTGGGAGAATCTATATTGACCAATGGGTTTTCCGGAGTGCGCAAATCATCAAGCGCGATGAGCCTAAGGGAGCAGGAGAGGAACAATTCAGCAACAGTGTGGCCACCAAGATGGAGTTTGAAACCAGACTTGCAAGCAGCCATTAGCAAACCTATCTTTGATGGCTTGCCTATCCCGATAACTGCCCGCAGGGGCAAAACTGCCCTTGATTAG 1086 0.4448 MSPSNVLQSNGGGGGGNGLNYIEHQVSKLDTLAGVAIKYGVEVADIKRMNGLASDLQMFAVKTLRIPLPGRHPPSRIPSLPNGHAKQGNSFLIETCCRDDSFVRRSPPRSKSGMKEPFQSSRLKAPKQELSPAMTILQKYYGLRSLKSTDTFEGTEMAAYTSVSSDHSSDEWLPKASPILDFQSDNYPKSTNLVYDLLTGNNEVPEYVPLSEIGDVGGEKSDEKSVRRRQKAEVDGGDGSPERILKEGNSSGSSNGFSSTGKPLSGRTKSASRAVLFPESESGWLDSIAVGLGESILTNGFSGVRKSSSAMSLREQERNNSATVWPPRWSLKPDLQAAISKPIFDGLPIPITARRGKTALD 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0912 361 Gene3D LysM domain 17 73 IPR036779 -
Lal10g0912 361 Pfam LysM domain 24 67 IPR018392 -
Lal10g0912 361 SUPERFAMILY LysM domain 22 67 IPR036779 -
Lal10g0912 361 MobiDBLite consensus disorder prediction 209 268 - -
Lal10g0912 361 CDD LysM 22 66 IPR018392 -
Lal10g0912 361 ProSiteProfiles LysM domain profile. 22 66 IPR018392 -
Lal10g0912 361 SMART LysM_2 23 67 IPR018392 -
Lal10g0912 361 MobiDBLite consensus disorder prediction 216 242 - -
Lal10g0912 361 MobiDBLite consensus disorder prediction 246 267 - -
Lal10g0912 361 MobiDBLite consensus disorder prediction 103 125 - -
Lal10g0912 361 PANTHER LOC443603 PROTEIN-RELATED 16 361 IPR045030 -
Lal10g0912 361 PANTHER PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN 16 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0912 Lal-Chr10 16542889 16548998 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0912 - - aip:107644597 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g0912 10 16542889 16548998 Lal10g0912 10 16542889 16548998 ECH
Lal8g0506 8 3462959 3466229 Lal10g0912 10 16542889 16548998 LSH
Lal25g0516 25 3680588 3683808 Lal10g0912 10 16542889 16548998 LSH