Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01298 ATGGGAAGACAAGCCGTCACCAGATTGCTGTCCTCTATCGCCTCGCGCCGCCATGGCCTCCGCCAATTCTCGGCGGCCACGCCGGCTGTGTTCGTCGACAAGAGCACACGCGTGATCTGCCAAGGCATCACCGGCAAGAACGGCACCTTTCACACCGAACAAGCCATCGAATACGGCACCAACATGGTTGGTGGTGTAACTCCTAAGAAGGGTGGAACCGAACACCTGGGCCTTCCCGTCTTCAACACTGTCGCTGAAGCGAAGGCGGAAACCAAGGCCAACGCCTCCGTCATCTACGTTCCTCCGCCGTTCGCTGCCGCCGCCATCATGGAAGCCATGGAGGCTGAGCTGGATCTTGTCGTCTGCATCACCGAGGGCATTCCTCAACACGACATGGTGCGAGTTAAGGCAGCACTTAACAGGCAGTCCAAGACTCGTCTGATAGGACCAAACTGCCCTGGTATTATCAAGCCTGGGGAATGTAAAATTGGAATCATGCCAGGATATATTCACAAGCCCGGTCGCATAGGAATTGTCTCTCGTTCTGGTACCTTGACGTATGAAGCAGTTTTCCAAACAACTGCTGTTGGCCTTGGACAATCCACTTGTGTGGGTATAGGAGGAGACCCCTTTAATGGAACAAACTTCGTTGACTGCCTTAGGAAGTTTCTAGCTGATCCTCAAACAGAAGTTTATTTTCCTATCAAGTGTTCTAGTAAGGAAAGCGGCACTGAGAAGCCTGTTGTTGCATTTATTGCTGGTTTGACTGCCCCTCCTGGCCGTCGAATGGGTCATGCTGGAGCTATTGTGTCGGGCGGCAAGGGCACTGCACAAGACAAAATTAAAACCCTCAGAGAAGCTGGGGTGACAGTCGTGGAATCCCCCGCCAAAATTGGAGCTGCCATGCTAGACGTTTTCAAGCAGAGGGGCTTGGTGCAATAG 942 0.5297 MGRQAVTRLLSSIASRRHGLRQFSAATPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTNMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLRKFLADPQTEVYFPIKCSSKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLDVFKQRGLVQ 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01298 313 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 254 267 IPR017440 -
Vian8g01298 313 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 21 311 - -
Vian8g01298 313 Pfam CoA-ligase 179 231 IPR005811 GO:0003824
Vian8g01298 313 Pfam CoA-ligase 240 289 IPR005811 GO:0003824
Vian8g01298 313 SMART CoA_binding_2 31 127 IPR003781 -
Vian8g01298 313 NCBIfam succinate--CoA ligase subunit alpha 31 305 IPR005810 GO:0003824
Vian8g01298 313 Pfam CoA binding domain 33 126 IPR003781 -
Vian8g01298 313 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 180 209 IPR033847 -
Vian8g01298 313 PRINTS Succinyl-CoA synthase signature 109 126 - -
Vian8g01298 313 PRINTS Succinyl-CoA synthase signature 258 275 - -
Vian8g01298 313 SUPERFAMILY Succinyl-CoA synthetase domains 151 308 IPR016102 -
Vian8g01298 313 PIRSF SucCS_alpha 25 309 IPR005810 GO:0003824
Vian8g01298 313 Gene3D - 29 148 - -
Vian8g01298 313 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 28 306 IPR005810 GO:0003824
Vian8g01298 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 28 150 IPR036291 -
Vian8g01298 313 Gene3D - 149 311 IPR016102 -
Vian8g01298 313 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha 27 148 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01298 117 308 Acyl Lipid Metabolism Gene Families AT3G06650 29.439 4.07e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01298 K01899 - gmx:100782001 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01298 8 31911117 31914647 Vian8g01298 8 31911117 31914647 ECH