Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2723 ATGGCTCGTCAAGCTCTACCCAAGTTCATCGCCTCCATAGCATCACGCGCCAaagcttcatcatcatcaccgtCATTTCCTTCTTCTTCGTCTCAGATCCGCCATTTCACGTCGGCGCCACCCGCTCCTGCAGTTTTCGTTGACAAGAACACGCGCGTCATCTGCCAAGGCATCACCGGCAAGAATGGTACCTTCCACACCGAGCAAGCCATCGAATACGGAACCAAGATGGTGGGTGGTGTAACTCCAAAGAAGGGTGGAACTGAACACTTGGGACTTCCCGTATTTAACACTGTTGCAGAAGCAAAGGCTGAAACAAAGGCCAATGCTTCAGTCATCTATGTTCCTCCACCATTTGCTGCAGCTGCCATTATGGAGGCAATGGAGGCCGAGTTGGATCTTGTTGTCTGCATCACTGAAGGTATTCCTCAGCATGATATGGTACGAGTGAAAGCTGCTCTTAACAGGCAGTCTAAAACACGTCTCATAGGACCAAACTGCCCTGGTATCATCAAGCCTGGTGAATGCAAAATTGGGATTATGCCAGGTTACATTCACAAACCTGGTCGCATTGGAATTGTTTCACGTTCTGGTACCTTAACATATGAAGCGGTTTTCCAAACAACTGCTGTTGGACTTGGACAATCCACTTGTGTGGGCATAGGAGGAGATCCTTTTAATGGAACAAACTTTGTTGATTGCATGGAGCGGTTCCTAGCAGATCCTCAGACAGAAGGTGAAGAAGTTGAGAGAGAGTGTATAATTCTCATAGGAGAGATAGGAGGAACTGCAGAAGAGGATGCCGCTGCACTAATTAagGAAAGTGGGACTGAGAAGCCTATTGTTGCATTTATTGCTGGATTAACTGCTCCCCCTGGCCGTCGCATGGGTCATGCCGGAGCAATCGTGTCCGGTGGCAAGGGTACGGCGCAGGACAAAATTAAGACCCTCAGGGAAGCTGGGGTCACAGTGGTGGAATCTCCTGCTAAAATTGGAGCTGCCATGCTAGATGTTTTCAAGCAGAGGGGCTTGGTGCAATAG 1041 0.4803 MARQALPKFIASIASRAKASSSSPSFPSSSSQIRHFTSAPPAPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCMERFLADPQTEGEEVERECIILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAMLDVFKQRGLVQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2723 346 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 43 339 IPR005810 GO:0003824
Sto10g2723 346 SMART CoA_binding_2 46 142 IPR003781 -
Sto10g2723 346 TIGRFAM sucCoAalpha: succinate-CoA ligase, alpha subunit 46 338 IPR005810 GO:0003824
Sto10g2723 346 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 287 300 IPR017440 -
Sto10g2723 346 PRINTS Succinyl-CoA synthase signature 124 141 - -
Sto10g2723 346 PRINTS Succinyl-CoA synthase signature 220 238 - -
Sto10g2723 346 PRINTS Succinyl-CoA synthase signature 291 308 - -
Sto10g2723 346 PANTHER SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT ALPHA-1, MITOCHONDRIAL 8 345 - -
Sto10g2723 346 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 8 345 - -
Sto10g2723 346 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 195 224 IPR033847 -
Sto10g2723 346 Pfam CoA-ligase 194 322 IPR005811 GO:0003824
Sto10g2723 346 Gene3D - 164 344 IPR016102 -
Sto10g2723 346 SUPERFAMILY Succinyl-CoA synthetase domains 166 341 IPR016102 -
Sto10g2723 346 Pfam CoA binding domain 48 141 IPR003781 -
Sto10g2723 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 44 165 IPR036291 -
Sto10g2723 346 PIRSF SucCS_alpha 42 342 IPR005810 GO:0003824
Sto10g2723 346 Gene3D - 44 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2723 Sto-Chr10 37436548 37441548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2723 132 341 Acyl Lipid Metabolism Gene Families AT3G06650 30.769 2.63e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2723 K01899 - nnu:104586082 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2723 10 37436548 37441548 Sto10g2723 10 37436548 37441548 ECH