Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00326 ATGGGTCGCCGAGCTGTAGCGAAGTTGATCAGCTCGTTTGCTTCACGCGCCAAAGCATCTTCATCGCAGTCACTTCCTTCTTCTTCTTCCACTCAGATCCGCCATTTCACGTCGGCGCCACCCTCTCCTGCCGTTTTCGTTGACAAGATCACACGCGTCATCTGCCAGGGTATCACCGGCAAGAATGGCACTTTCCACACCGAGCAAGCCATCGAATACGGAACCAAGATGGTGGGTGGTGTAACACCAAAGAAGGGTGGAACTGAACACTTGGGACTTCCTGTGTTTAACACTGTTGCTGAAGCAAAAGCTGAAACAAAGGCAAATGCTTCAGTCATCTATGTTCCTCCACCATTTGCTGCTGCTGCCATTTTGGAGGCAGTGGAAGCTGAGTTGGATCTTGTTGTTTGTATCACTGAAGGAATTCCTCAGCATGATATGGTACGGGTGAAAGCTGCTCTTAATAGACAGTCCAAGACTCGTCTGATTGGACCAAACTGCCCTGGTATCATCAAGCCTGGTGAATGTAAAATTGGAATAATGCCAGGTTACATTCATAAACCTGGTCGCATAGGAATTGTTTCTCGTTCTGGCACCTTGACATATGAAGCGGTTTTCCAAACAACTGCTGTTGGACTTGGACAATCCACTTGTGTGGGCATAGGTGGAGATCCTTTTAATGGAACAAACTTTGTTGATTGTGTGGAGCGGTTCCTGGTAGATCCACAGACTGAAGGCATGATTCTCATTGGAGAGATAGGGGGAACTGCGGAAGAAGATGCTGCGGCACTAATTAAGGAAAGTGGGACTGAGAAGCCTATTGTTGCATTTATTGCTGGATTAACAGCTCCCCCTGGCCGTCGTATGGGTCATGCTGGAGCCATTGTATCAGGTGGCAAGGGTACTGCTCAGGACAAAATTAAGACACTGAGGGAAGCTGGGGTCACTGTAGTGGAGTCGCCGGCTAAAATTGGAGCTGCCATTCTTGATGTTTTCAAGCAGAGGGGCTTGGTCCAGTAG 1020 0.4853 MGRRAVAKLISSFASRAKASSSQSLPSSSSTQIRHFTSAPPSPAVFVDKITRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAILEAVEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCVERFLVDPQTEGMILIGEIGGTAEEDAAALIKESGTEKPIVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGAAILDVFKQRGLVQ 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00326 339 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 44 165 IPR036291 -
Accr1g00326 339 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 43 332 IPR005810 GO:0003824
Accr1g00326 339 Pfam CoA binding domain 48 141 IPR003781 -
Accr1g00326 339 Gene3D - 44 163 - -
Accr1g00326 339 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 195 224 IPR033847 -
Accr1g00326 339 Pfam CoA-ligase 194 315 IPR005811 GO:0003824
Accr1g00326 339 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial 164 337 - -
Accr1g00326 339 SMART CoA_binding_2 46 142 IPR003781 -
Accr1g00326 339 NCBIfam succinate--CoA ligase subunit alpha 46 331 IPR005810 GO:0003824
Accr1g00326 339 PIRSF SucCS_alpha 42 335 IPR005810 GO:0003824
Accr1g00326 339 PRINTS Succinyl-CoA synthase signature 124 141 - -
Accr1g00326 339 PRINTS Succinyl-CoA synthase signature 220 238 - -
Accr1g00326 339 PRINTS Succinyl-CoA synthase signature 284 301 - -
Accr1g00326 339 PRINTS Succinyl-CoA synthase signature 251 264 - -
Accr1g00326 339 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 28 337 - -
Accr1g00326 339 FunFam Succinate--CoA ligase [ADP-forming] subunit alpha 43 163 - -
Accr1g00326 339 Gene3D - 164 337 IPR016102 -
Accr1g00326 339 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 280 293 IPR017440 -
Accr1g00326 339 SUPERFAMILY Succinyl-CoA synthetase domains 166 334 IPR016102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00326 Accr-Chr1 6524607 6530431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00326 132 334 Acyl Lipid Metabolism Gene Families AT5G49460 33.178 4.16e-23 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00326 K01899 - qsa:O6P43_008400 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g00326 1 6524607 6530431 Accr1g00326 1 6524607 6530431 ECH